Marine Microbial Eukaryote Transcriptome Sequencing Project
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Nitzschia sp. RCC80
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| Principle Investigator(s) | E. Virginia Armbrust |
|---|---|
| External sample ID | Nitzschia sp. |
| NCGR Sample ID | MMETSP0014_2 |
| Sample accession number | CAM_SMPL_002341 |
| Assembly accession number | CAM_ASM_000159 |
| Combined Assembly Name | N/A |
| Genus | Nitzschia |
| Species | sp. |
| Strain | RCC80 |
| Clonal | Unknown |
| Axenic | No |
| Prelim. NCBI Taxon ID | 2857 |
| 18S rRNA | |
| Importance of organism and transcriptomes | |
| Additional citations and references | |
| Environmental Data | |
| Latitude | 48.43 |
| Longitude | 3.59 |
| Collection date | 06-JAN-97 |
| Sample collection site | English Channel |
| Other collection site info | Britanny Coast |
| Sample material (e.g. "seawater," "sediment," etc.) | Seawater |
| Filter fraction minimum (μm) | .8 |
| Filter fraction maximum (μm) | .8 |
| Volume filtered (L) | 4 |
| ENVO term for habitat - primary term | Acquatic: marine |
| ENVO term for habitat - secondary term | Not Applicable |
| Other environmental metadata available | no other types of environmental metadata available |
| Other environmental metadata available | no other types of environmental metadata available |
| Habitat | marine habitat |
| Country | FRANCE |
| Experimental Data | |
| Date of experiment | 17-OCT-10 |
| Growth medium | K+Si |
| Temperature (ºC) | 20 |
| Salinty (psu) | 21 |
| pH | 8 |
| Light (µmol photons / m2 / sec) | 166 |
| Day portion of day:night cycle in hours | 16 |
| Night portion of day:night cycle in hours | 8 |
| Nitrate (μmol/L) | 882 |
| Ammonium (μmol/L) | 50 |
| Silicate (μmol/L) | 504 |
| List of amino acids and concentrations, with units | thiamine, 200 mg; biotin, 10 mL; cyanocobalamin, 1 mL |
| Trace elements (total) (nmol/L) | 123.766 |
| CO2 (ppm) | 447 |
| Investigation type | Eukaryotes |