Lotharella oceanica CCMP622

Downloads:

Reads

Annotations

Peptides

Contigs

CDS

Environmental Data
Principle Investigator(s)	John Archibald
External sample ID	lc1
NCGR Sample ID	MMETSP0040_2
Sample accession number	CAM_SMPL_002354
Assembly accession number	CAM_ASM_000172
Combined Assembly Name	N/A
Genus	Lotharella
Species	oceanica
Strain	CCMP622
Clonal	Unknown
Axenic	Yes
Prelim. NCBI Taxon ID	641309
18S rRNA	TCTAAGTATAAACAACTTTATACTGTGAAACTGCAGATGGCTCATTAAATCAGAAATAATTTATTTGATG GTGAAAAACTACATGGATACCCGTAGTAATTCTAGAGCTAATACATGCGTAAACACCTTTTGGTGGTATT TATTAGATCCGAACCAGCCCCTTTGGGACTTCTGGTGAATCATGATAACTGTTCGAATGCTCAGGCTCTG CCAGGGCATAGTTCATTCAAATTTCTGCCCTATCAGCTATTGACGGTAGTGTAGTGGACTACCGTGGCTT TAACGGGTGACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGA AGGCAGCAGGCGCGCAAATTACCCAATCCCGACACGGGGAGGTAGTGACAAGAAATATGGTGACTGTGCC CTTTGTGGCAGAGTCTTCCAAATGATAGTAACGTAAATGCCTATTAGAGTATCCATTGGAGGGCAAGTCT GGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTA GTTGGATATCTGACCTTGCATAGACGGCCCGCCCTCGTGGTTGTGTGCTGGAGTGCTGGTCTATCTTTCG GTTGATGGCCATGGAGTTAACCCTCCGTGGTGGTTATCCGGATCGTTTACTTTGAAAAAATTGGAGTGTT CAAAGCAGGCTTATGCCGTGAACAGTTTAGCATGGAATAATACTATAGGACAGTCGTGTCTTATTTTGTT GGTTCTAAGACCGTTGTAATGATTGATAGGGACAGTTGGGGGTGCTGCTATTCCGCGGCCAGAGGTGAAA TTCTCAGATTCCCGGAAGAGCAACTTATGCGAAAGCATTCACCAAGGATGTCTTCTCTGATCAAGAACGA AAGTTGGGGGATCGAAGACGATCAGATACCGTCGTAGTCTCAACCATAAACTATGCCGACTAGGGATTGG GGGACGTTGAATTATCCGACTTCCTCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTA TGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGACACCACCAGAAGTGGAACTTGCGGCTTAATT TGACTCAACACGGGAAAACTTTCCAGGTCCAGACATAGTGAGGATTGACAGATTGAAGATCTTTCTTGAT TCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAAC GAGACCTCGACCTGCTAAATAGTTTCGGCATCGATGTTCGATGTCAGGAGCTTCTTAGAGGGACTATCGG ATCCAAGCCGGTGGAAGTGCGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGT GTTACACTGATGCGTTCATCGAGCTGTCCTGCCCCGGTAGGGGTTGGGTAATCTTGAAAGCGCATCGTGC TGGGGATAGATTATTGTAATTTTTAATCTTCAACGAGGAATTTCTAGTAAACGTGAGTCATCAACTCGCA TTGATTACGTCCCTGTCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATCATTTGGTGAGGTCCA CGGACTGTTGTACTCTGGGGCTTGCCTTGGTGTACTTCTTGGGA
Importance of organism and transcriptomes	Lotharella oceanica is a chlorarachniophyte, a group of algae that acquired plastids by engulfing a green algal endosymbiont. Together with the cryptomonads, chlorarachniophytes are unusual in that they retain a residual endosymbiont nucleus called a nucleomorph. Transcriptomic analyses in both cryptomonads and chlorarachniophytes will give us insights into the process of endosymbiotic gene transfer and the evolution of organelles.
Additional citations and references
Experimental Data
Date of experiment	23-NOV-11
Growth medium	K
Modifications to growth medium	K without silicate
Temperature (ºC)	25
Salinty (psu)	35
pH	7.2
Day portion of day:night cycle in hours	12
Night portion of day:night cycle in hours	12
Nitrate (μmol/L)	882
Ammonium (μmol/L)	50
Phosphate (μmol/L)	10
Trace elements (total) (nmol/L)	122766