Oxyrrhis marina CCMP1788

Downloads:

Reads

Annotations

Peptides

Contigs

CDS

Environmental Data
Principle Investigator(s)	Claudio Slamovits
External sample ID	Om1788b
NCGR Sample ID	MMETSP0044
Sample accession number	CAM_SMPL_002371
Assembly accession number	CAM_ASM_000189
Combined Assembly Name	N/A
Genus	Oxyrrhis
Species	marina
Strain	CCMP1788
Clonal	Unknown
Axenic	No
Prelim. NCBI Taxon ID	2969
18S rRNA	CTAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCTTGACACAAGGAGG TAGTGACAAGAAATAACTGTGTGTGGCTCTATGCTGCACATCCGGAATGT GTGACAGGTTAAGCGTGTTGCGAGTAGCTATTGGAGGGCAAGTCTGGTGC CAGCAGCCGCGGTAATTCCAGCTCCAAGAGTGTATATTAAAGTTGTTGCG GTTGAAAAGCTCGTAGTTGGATTTATGCTATGCTGGTACAGTCGACCCCC TGGGTAGGACTTGTATTGTTGCATTGCACATTGTAGAATTTTTGTACGTT TTTCAGTAAATGTGCAGAATGCTGCTTAGTTACTTTGAGGAAAGTGGAGT GTCACACGCAGGTTGCGCCGTGAACATGCTAGCATGGCATGACGCTGTAT GACTACGAGTCTTTTTGAATGGTTTCGGGACACGTGGTAATGATTGATAT GAGGTGTTGGGGATACTCATATTTGACAGTTAGAGGTGAAATTCTTGGAT TTGTCAAAGATGAACAAATGCAATAGCATTTATCATGGATGTTTCATTTG ATCAAGAACGAAAGTTAGGGGATCGAAGACGATCAGATACCGTCCTAGTC TTAACCATAAACTATGCCAACTGGAAATTGGAATATATGGAGAGAAAATA CATTCAGTATTGTGCCTGAAAAGAGTAAGTGTGTGGGCTCCGGGGGGAGT ATAGTTGCAAGACTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGG AGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAATCTCATCAAGTC CAGACATACGAAGGATTGACAGATTAATCGCTCTTTCTCGATTGTATGGG TGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATT CCGTTAACGAACGAAATCCTATTCTGCTAACTGTTGCAACAGTCTTTGGA ATGTTGGTACACTTAGAGGGACATTGCGTGAGTAATGCACGGAAGAGTCG GGCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGC TACAATGGCACACGCCCCAATGTATCTATGTCTGACAAGAATATAGGATC AAGCAACGATGCCGTGCCGGGAATAGATGATTGTAATTTTTTATCTTGAA CGAGGAATTCCTAGTAAGGACAGATCAACAATCTGTGCTGATTACGTCCC TGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAGTAATCCGGTG AATGGTGACGATTGTCCGAACGCTCCTGAGCCTCGTGCAACAAGCATCGT TAACCTCACTACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGT GAACCTGCGGAAGGATCATTTGTGGATAATCCAGATGAATATGTGAATTC CACCCCTTCATGCGAGAAAAGTGCTGTACCTGCTCAAGTAGAAAAGCGCA GCGACGAATTTCTAGAATCAATAAACGAAGACGAGCGCAGCAAAATGCGA AAAGCCGAACGATATGCTGATGATCGTGATGTTTGTGCAATTCTAATACA GGAAGTGGGGCAATGTTGTCTCGTCCTTGTTGCAGGGTATCGGACTATGT
Importance of organism and transcriptomes	O. marina is a basal dinoflagellate, occurs worldwide, usually in rocky shores and tide pools, rare in open waters
Additional citations and references	J. Plankton Res. (2011) 33 (4): 549-554.
Primary citation for organism's characterization, if available	J. Plankton Res. (2011) 33 (4): 555-567
Habitat description	rocky shores, tide pools
Habitat	marine habitat
Experimental Data
Date of experiment	01-DEC-10
Growth medium	f/2 amended seawater
Modifications to growth medium	added Valine, Cholesterol and Ubiquinone
Temperature (ºC)	25
Salinty (psu)	18.5
pH	8
Day portion of day:night cycle in hours	16
Night portion of day:night cycle in hours	8
Nitrate (μmol/L)	880
Ammonium (μmol/L)	100
Phosphate (μmol/L)	36
Trace elements (total) (nmol/L)	276
Investigation type	Eukaryotes
Other experimental metadata available	ESTs