Marine Microbial Eukaryote Transcriptome Sequencing Project
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Chaetoceros affinis CCMP159
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| Principle Investigator(s) | Sonya Dyhrman, Andrew Juhl |
|---|---|
| External sample ID | Ca, -N, modern CO2 |
| NCGR Sample ID | MMETSP0090 |
| Sample accession number | CAM_SMPL_003277 |
| Assembly accession number | CAM_ASM_001088 |
| Combined Assembly Name | Chaetoceros-affinis-CCMP159 |
| Genus | Chaetoceros |
| Species | affinis |
| Strain | CCMP159 |
| Clonal | Yes |
| Axenic | No |
| Prelim. NCBI Taxon ID | 426623 |
| 18S rRNA | N/A |
| Importance of organism and transcriptomes | 5S rRNA sequence: TACAACTTTCAGCAATGGATTTCTTGGCTCCTACAACGATGAAGAACGCAGCGAAATGCGATATGTAATA TGAATTGCACGATTTCGGAATCATCAAAATTTTGAACGCACATTGCATTACCGGGAATGTACCTGGTAGT ATGCTTGGTTGAGTGTCCGTGAACCCAACTAGACCTCACAGAGTGTCTGAATATGGTGTTGCTGGAAGAA CATACCCCTAGGGTGTGTATATCCAGCTCCACTGAAGTGAGTGGTCCTGACTTTACTGTCACTGNNNACA ACTTGCGCACTGCCCCCGGGTCTAGNNNNGNGTTACAGTCTCTCTGGTA |
| Additional citations and references | |
| Environmental Data | |
| Experimental Data | |
| Date of experiment | 14-OCT-11 |
| Growth medium | L1 |
| Modifications to growth medium | 16N:1P |
| Temperature (ºC) | 18 |
| Salinty (psu) | 32 |
| pH | 8.3 |
| Light (µmol photons / m2 / sec) | 100 |
| Day portion of day:night cycle in hours | 14 |
| Night portion of day:night cycle in hours | 10 |
| Nitrate (μmol/L) | 5 |
| Phosphate (μmol/L) | 36 |
| Trace elements (total) (nmol/L) | 1000 |
| CO2 (ppm) | 400 |
| Pressure (atm) | 1 |
| Investigation type | Eukaryotes |