Chlorarachnion reptans CCCM449

Downloads:

Reads

Annotations

Peptides

Contigs

CDS

Environmental Data
Principle Investigator(s)	Patrick Keeling
External sample ID	Chlroarachnion reptans
NCGR Sample ID	MMETSP0109
Sample accession number	CAM_SMPL_002403
Assembly accession number	CAM_ASM_000221
Combined Assembly Name	N/A
Genus	Chlorarachnion
Species	reptans
Strain	CCCM449
Clonal	Yes
Axenic	No
Prelim. NCBI Taxon ID	29199
18S rRNA	CCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGACTAAGCCATGCATGTCTAAGTATGAACAA CTTTATACTGTGAAACTGCAGATGGCTCATTAAACCAGGAATAATTTTTTTGATGGTGACAAACTACATG GATATCCGTGGTAATTCTAGAGCTAATACATGCGTCGACACCGCAAGGTGGTATTTATTAGATCCGAACC AAGCCTTCGGGGTTTCTTGGTGAATCATGATAACTGTTCGTATTGCCAGCTCTGCCAGGCGAAAGTTCAT TCAAATTTCTGCCCAATCAGCTATTGACGGTAGTGTAGTGGACTACCGTGGCTTTAACGGGTGACGGAGA ATTAGGGTTCGATTCCGGAGTGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCA AATTTACCCAATCCCGACACGGGGAGGTAGTGACAAGAAATATGATGACTGTGCCCTTTGCGGCAGAGTT TTTCAAATGAGTGTAATGTAAATGCCTATGCGAGTATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGC GGTAATTCCAGCTCCAATAGCGTATATTAATGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATATCTGGCA TTGCGTTGACGGCCCGCCTTCGGTTGGGTGCTGGATTCGCTTGCCTATTTCCGGTTGGCGTCGGTTCCCT TTGTTGGGCTATAGGGCCGTTTCGCGATCCGGATCGTTTACTTTGAAGAAATTCGAGTGTTCAAAGCAGG CTTACGCCGTGAAGATTGCAGCATGGAATGATGACATAGAACTGTTGTGTTCTATTTTGTTGGTTCTGGG ACCACAGTGATGATTGATAGGGACAGTTGGGGGTGCTGCTATTCCGCGGCCAGAGGTGAAATTCTCAGAT TCCCGGAAGAGCAACTTATGCGAAAGCATTCACCAAAGATGTCTTCTTTAATCAAGAACGAAAGTTGGGG GATCGAAGACGATCAGATACCGTCGTAGTCTCAACCATAAACTATGCCGACTAGGGATTGGGGGACGTTG TTTTATCCGACTTCCTCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCCGGGGGGAGTATGGTCGCA AGGCTGAAACTTAAAGGAATTGACGGAAGGACACCACCAGAAGTGGAACTTGCGGCTTAATTTGACTCAA CACGGGAAAACTTTCCAGGTCCAGACATAGTGAGGATTGACAGATTGAAGATCTTTCTTGATTCTATGGG TGGTGGTGCATGGCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCG ACCTGCTAAATAGCAGCGGTATCGATCGTCGATGCCCGGCTTCTTAGAGGGACTATCGGATTCCAAGCCG GTGGAAGTGCGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGTGTTACACTGA TGCGTTCATCAAGCTCCCCACCTTGGCTCGAGAGGCCTCGGTATCTTGAAATCGCATCGTGCTAGGGACA GACCATTGTAATTTTTGGTCTCCAACGAGGAATTTCTAGTAAGCGCGAGTCATCAACTCGCATTGATTAC GTCCCTGTCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATCATTTGGTGAGGTCCACGGACTGT CGTACTCTCTTCCTCGTGTTGATTGTACTTCTTGGGAAGTGGCACGAACCTGATGATTTAGAGGAAGTAA AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCAGAAGGATCA
Importance of organism and transcriptomes	Chlorarachniophyte species have diversity in their morphology (amoeboid, coccoid, flagellate cells) and life cycles, and some of them possess multiple cell types in the life cycles. Chlorarachnion reptans exists these three cell types. The transcriptome gave us a clue to know relationship between morphological and molecular characters of chlorarachniophytes.
Additional citations and references	DOI:10.1111/j.1529-8817.2010.00851.x
Primary citation for organism's characterization, if available	DOI: 10.1111/j.0022-3646.1984.00310.x
Collection date	01-JUN-66
Sample collection site	OTHER
Other collection site info	Puerto Penasco
Sample material (e.g. "seawater," "sediment," etc.)	Seawater
ENVO term for habitat - primary term	Acquatic: marine
ENVO term for habitat - secondary term	Other
Habitat	marine habitat
Country	MEXICO
Experimental Data
Date of experiment	26-FEB-11
Growth medium	ESM medium
Temperature (ºC)	20
Salinty (psu)	35
pH	8
Light (µmol photons / m2 / sec)	55
Day portion of day:night cycle in hours	12
Night portion of day:night cycle in hours	12
Nitrate (μmol/L)	1410
Phosphate (μmol/L)	29
Investigation type	Eukaryotes