Lotharella globosa CCCM811

Downloads:

Reads

Annotations

Peptides

Contigs

CDS

Environmental Data
Principle Investigator(s)	Patrick Keeling
External sample ID	L. globosa flagellate
NCGR Sample ID	MMETSP0112_2
Sample accession number	CAM_SMPL_002406
Assembly accession number	CAM_ASM_000224
Combined Assembly Name	Lotharella-globosa-CCCM811
Genus	Lotharella
Species	globosa
Strain	CCCM811
Clonal	Yes
Axenic	No
Prelim. NCBI Taxon ID	91324
18S rRNA	AGTAGTGATATGCTTGTCTCAAAGACTAAGCCATGCATGTCTAAGTATAAACAACTTTATACTGTGAAACTGCAGATGGCTCATTAAATCAGAAATAATTTATTTGATGGTGAAAAACTACATGGATACCCGTAGTAATTCTAGAGCTAATACATGCGTAAACACCTTTTGGTGGTATTTATTAGATCCGAACCAGCCCCTTCGGGGACTTCTGGTGAATCATGATAACTGTTCGAATGCTCAGGCTCTGCCAGGGCATAGCTCATTCAAATTTCTGCCCTATCAGCTATTGACGGTAGTGTAGTGGACTACCGTGGCTTTAACGGGTGACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACACGGGGAGGTAGTGACAAGAAATATGGTGACTGTGCCCTTTGTGGCAGAGTCTTCCAAATGATAGTAACGTAAATGCCTATTAGAGTATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATATCTGACCTCGCATAGACGGCCCGCCCTCGTGGTTGTGTGCTGGAGTGCTGGTCTCTTTTTCGGTTGATGGCGATGCAGTTTACCCTGCGTCGTGGTTATCCGGATCGTTTACTTTGAAAAAATTGGAGTGTTCAAGCAGGCTTACGCCGTGAACAGTTTAgCATGgaaTAATACTATaggACAGTCGTGTCTTATTTTGTTGGTTCTAagaCCGTTGTAATGATTGATAGGGACAGTTGGGGGTGCTGCTATTCCGCGgCCAGAGGTGAAATTCTCAGATTCCCGGAAGAGCAACTTATgcGAAAGCATTCACCAAGGATGTCTTCTCTGATCAAGAACGAAAGTTGGGGGATcGAAGACGATCAGATACCGTCGTAGTCTCAACCATAAACTATGCCGACTAGGGATTGGGGGACGTTGAATTATCCGACTTCcTCAGCACcTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGACACCACCAGAAGTGGAACTTGCGGCTTAATTTGACTCAACACGGGAAAACTTTCCAGGTCCAGACATAGTGAGGATTGACAGATTGAAGATCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCGACCTGCTAAATAGTTTCGGCATCGATGTTCGATGTCGCGAGCTTCTTAGAGGGACTATCGGATCCAAGCCGGTGGAAGTGCGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGTGTTACACTGATGCGTTCATCAAGCTGTCCTGCCCCGGTAGGGGTCGGGTAATCTTGAAAGCGCATCGTGCTGGGGATAGATTATTGTAATTTTTAATCTTCAACGAGGAATTTCTAGTAAACGTGAGTCATCAACTCGCATTGATCACGTCCCTGTCCTTTGTGCACACCGCCCGTCGTTACTACCGATTGAATCATTTGGTGAGGTCCACGGACTGTTGTGCGGCTTGGCTTGCCAAGACGCACTTCTTGGGAAGTGGCACGAACCTGATGATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCC
Importance of organism and transcriptomes	Several species of chlorarachniophyte have unique life cycles. This strain possesses two cell types (coccoid and flagellate cells) in its life cycle, and these cells can be separated under different culture conditions. The transcriptome gave us a clue to know control mechanisms of the life cycle.
Additional citations and references	DOI: 10.1111/j.1440-1835.1996.tb00036.x
Primary citation for organism's characterization, if available	Ishida K. and Hara Y. (1994) Taxonomic studies on the Chlorarachniophyta I. Chlorarachnion globosum sp. nov. Phycologia 33(5):351-358.
Latitude	13.4
Longitude	144.7
Collection date	12-FEB-90
Sample collection site	OTHER
Other collection site info	coral reef of Anae Island
Sample material (e.g. "seawater," "sediment," etc.)	Seawater containing a marine chrysophyte
ENVO term for habitat - primary term	Acquatic: marine
ENVO term for habitat - secondary term	Other
Habitat	marine habitat
Country	GUAM
Experimental Data
Date of experiment	09-MAY-11
Growth medium	ESM medium
Temperature (ºC)	20
Salinty (psu)	35
pH	8
Light (µmol photons / m2 / sec)	55
Day portion of day:night cycle in hours	12
Night portion of day:night cycle in hours	12
Nitrate (μmol/L)	1410
Phosphate (μmol/L)	29
Investigation type	Eukaryotes
Other experimental metadata available	flagellate cells