Paramoeba atlantica 621/1 / CCAP 1560/9

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Environmental Data
Principle Investigator(s)	Jan Pawlowski
External sample ID	Paramoeba atlantica 621/1
NCGR Sample ID	MMETSP0151_2
Sample accession number	CAM_SMPL_002439
Assembly accession number	CAM_ASM_000257
Combined Assembly Name	N/A
Genus	Paramoeba
Species	atlantica
Strain	621/1 / CCAP 1560/9
Clonal	Yes
Axenic	No
Prelim. NCBI Taxon ID	200890
18S rRNA	CTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTTAAAGACTAAGCCATGCATGTCTAAGTATAAACACTTGTACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAATTTATTTGATGGTCCTTTATTTTACTACTTGGATAACCGTGGTAAATCTAGAGCTAATACATGCATAAAATCCTAACTCCTTTGAGAGAAGGGATGTATTTATTAGATACAAAAACCAATGCAATCCTTTGGGGTTGGTTAACATATGGTGAATCATGATAACTTTACGAATCGTATGGTCTTTTGTGCCGACGATAGTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGTATAGAGGACTACCATGGTGGTAACGGGTAACGGAGAATCAGGGTTTGATTCCGGAGAAGGAGCCTGAGAAACGGCTACTACTTCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACACGGGGAGGTAGTGACAAAAAATAACAATACCGGTTCAATATTTGATCTGGTAATTGGAATGAGTACAATCTAAACCCCTTAACGAGTAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCATATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGAGAGTTTTATAATTTAATCCATGTGGTTTTTCATATGTGTTTTATTAAGTTATATTCTCTAAATATTTTATTAGATATTCATTATTGCACTTAATTGGGTGATAATTTGGTTTTCTTTCGGGAGAATCAGTGTTTATTGGACCTTTATTAGTAAGATTGTGGATATAAATTCTTTGGAGTTTGTGTTCTGCTTATTAATAAAACTGATAAATAGAATTCTAATTCATTTACTTTGAGTAAATTAGAGTGTTCAAAGCAAGCAAATTTGTAAATTGCAATGAATACTATTAGCATGGGATAATGGAACAAGACATTGGGTCTATTTTATTGGTTTTTTAGAACTAATGTAATGATTAAAAGGGATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACTAACTTCTGCGAAAGCATTTGTCAAAGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCGAAGACGATCAGATACCGTCGTAGTCTTAACCATAAACGATGCCGACCAGGGGTTGGAAGACGTTTTATTTTGAATAAAGATGACTCCTCCAGTACCTTTTTACGAGAAATCAGTAAGTTTTTGGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAAACTTACCAGGTCCAGACACAGTTAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACCTCAGCCTACTAATTAGTTGTATTAATAATTACATTTATGAGGGTTTTTAATTAAATGTGGATTTTGTTAACACTTAATTTCTTTTTATTAAGAAAACTCGTTTTTATTGATATTAAAAAAGATTTAATTCTTTTAAACTTCTTAGAGGGACACTTGGTGTTTAACCAAGGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTTAGATGTTCTGGGCTGCACGCGCGCTACACTGATACAATCAACAAGTACAAAAGGCCTTGGCTGAAAAGTCACGCTGACCTTTTACGAGGTTAGCATTTTTGGGTAAACTTTTGAAATTGTATCGTGCTGGGGATCGATACTTGCAATTATTTATCGTGAACGAGGAATTCCTAGTAAGCACAAGTCAACAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTGCTACTGATGGTTGGTCCGGTGAAATCTTAGGATTAGAGACAGTTACTTATTGATTTCGGTTAATAAGTTTGTTTTTGAGAATTTGAGTAAACCTTGCCAACTAAAAGAAGCAAAAGTCGTAACAAGGTATCCGTAGGTGAACCTGCAGAAGGATCA
Importance of organism and transcriptomes	Paramoeba is one of the amoebozoan genera containing a ?parasome?, an obligate kinetoplastid symbiont located near the nucleus. It belongs to a group of amoebae, of which most of species were observed to be agents of mortal diseases of marine fishes and invertebrates. Transcriptome data available for Paramoeba may clarify the nature of the host-symbiont relationships in this system and contribute to understanding the evolution of Discosea.
Additional citations and references
Primary citation for organism's characterization, if available	Kudryavtsev A, Pawlowski J, Hausmann K (2011) Description of Paramoeba atlantica n. sp. (Amoebozoa, Dactylopodida) ? a marine amoeba from the Eastern Atlantic, with emendation of the dactylopodid families. Acta Protozool, in press
Latitude	29.60806
Longitude	-28.98667
Depth (m)	267.4
Salinity (psu)	35
Collection date	17-AUG-09
Collection time	09:03 AM
Sample collection site	Atlantic_Ocean
Other collection site info	Expedition DIVA3, bottom sediments of the Great Meteor Seamount
Sample material (e.g. "seawater," "sediment," etc.)	Marine sediment
ENVO term for habitat - primary term	Acquatic: marine
ENVO term for habitat - secondary term	Sediment
Habitat description	Sandy bottom sediment
Other environmental metadata available	no other types of environmental metadata available
Other environmental metadata available	no other types of environmental metadata available
Habitat	marine habitat
Experimental Data
Date of experiment	21-JUN-11
Growth medium	seawater with wheat grains
Temperature (ºC)	20
Salinty (psu)	35
pH	7.5
Prey organism, if applicable (genus and species)	bacteria
Investigation type	Eukaryotes