Thalassiothrix antarctica L6-D1

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Environmental Data
Principle Investigator(s)	Bank Beszteri
External sample ID	T. antarctica CTR 1
NCGR Sample ID	MMETSP0152
Sample accession number	CAM_SMPL_002440
Assembly accession number	CAM_ASM_000258
Combined Assembly Name	Thalassiothrix-antarctica-L6_D1
Genus	Thalassiothrix
Species	antarctica
Strain	L6-D1
Clonal	Yes
Axenic	No
Prelim. NCBI Taxon ID	1049557
18S rRNA	gtgaaaccccttaaccagcgttggtcctgccagtagtcatacgctcgtctcaaagattaagccatgcatgtctaagtataaatattttactttgaaactgcgaacggctcattatatcagttataatttatttgataatcccttactacttggataaccgtagtaattctagagctaatacatgcgtcaacacccttgggtggcaattattagaaataaaccaactccttcgggatgttttggtgaatcataataaccttgtgaatcgcatagcaactgctggcgatggatcattcaagtttctgccctatcagctttggatggtagggtattggcctaccatggctttaacgggtaacgggaaattagggtttgattccggagagggagcctgagagacggctaccacatccaaggaaggcagcaggcgcgtaaattacccaatcctgacacagggaggtagtgacaataaataacaatgccgggcctttgtaggtctggcaattggaatgagaacaatctaaaccccttatcgaggaccaattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatattaaagttgttgcagttaaaaagctcgtagttgaacttgtggcctggatggctcggtctgacgcttatgcgtgagtacctgagccatccgaccatccttgggtggaacctgtgtggcattaagttgtcgtgtaggggatgcccatcttttactgtgaaaaaattagagtgttcaaagcaggcttatgcctttgaatatattagcatggaataatgatataggactttggtactattttgttggtttgtgcactaaagtaatgattaatagggacagttggggatatgtttatttttaggtcagaggtgaaattcttggattctttaaagactaactactgcgaaagcatttatcaaggatgttttcattaatcaagaacgaaagttaggtgatcgaagatgattagataccatcgtagtcttaaccataaactatgccgacaagggattggcggtcgttgtattgaccccgtcagcaccttatgagaaatcacaagtctttgggttccggggggagtatggtcgcaaggctgaaacttaaagaaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacgggaaaacttaccaggtccagacatagtaaggattgacagattgagagctctttcttgattctatgggtggtggtgcatggccgttcttagttcgtgggccgacttgtctggttaattccgttaacgaacgagacccctgcctgctaaatagttttgctaatgatttttcattggtattataacttcttagagggacgtgcgttctattaaacgcaggaagataggggcaataacaggtctgtgatgcccttagatgtcctgggccgcacgcgcgctacactgatgaatgcaatgagtttaccttggccgagaggcctgggaaatctgtgaacgttcatcgtgatagggattgatcattgaaatttttgatcatgaacgaggaattcctagtaaacgcagatcatcagtctgcattgattacgtccctgccctttgtacacaccgcccgtcgcacctaccgattgaatggtccggtgaagcctcgggattgcgatgagtctcctttattggggatccgtcgcgagaacttgtctaaaccttatcattagagaagggagtgacatct
Importance of organism and transcriptomes	T. antarctica is endemic to the Southern Ocean and is among the dominant diatom species of the land-remote Antarctic Circumpolar Current (ACC). It constitutes a major component of the siliceous opal belt surrounding Antarctica due to its heavily silicified cell walls. This transcriptome is part of a comparative study of the transcriptomic responses of Southern Ocean diatoms to iron limitation.
Additional citations and references
Primary citation for organism's characterization, if available	A.Schimper ex G.Karsten 1905: 124, pl. 17: fig. 12
Latitude	-51.83333
Longitude	-28.66667
Collection date	20-JAN-09
Sample collection site	Southern_Ocean
Other collection site info	expedition LOHAFEX
Sample material (e.g. "seawater," "sediment," etc.)	seawater
ENVO term for habitat - primary term	Acquatic: marine
Other environmental metadata available	further metadata available at http://www.pangaea.de
Other environmental metadata available	further metadata available at http://www.pangaea.de
Habitat	marine habitat
Experimental Data
Date of experiment	24-JUN-11
Growth medium	modified f/2 amended seawater
Modifications to growth medium	Using trace metal solution after Morel et al. 1979. medium set up using trace metal clean conditions and procedures.
Temperature (ºC)	3
Salinty (psu)	33.6
pH	8.15
Light (µmol photons / m2 / sec)	35
Day portion of day:night cycle in hours	16
Night portion of day:night cycle in hours	8
Nitrate (μmol/L)	28
Ammonium (μmol/L)	.09
Phosphate (μmol/L)	28.45
Silicate (μmol/L)	60
Total Fe (nmol/L)	11000
Trace elements (total) (nmol/L)	7.3
Investigation type	Eukaryotes