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Thalassionema nitzschioides L26-B
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Principle Investigator(s) | Bank Beszteri |
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External sample ID | T. nitzschioides CTR 1 |
NCGR Sample ID | MMETSP0156 |
Sample accession number | CAM_SMPL_002428 |
Assembly accession number | CAM_ASM_000246 |
Combined Assembly Name | Thalassionema-nitzschioides-L26_B |
Genus | Thalassionema |
Species | nitzschioides |
Strain | L26-B |
Clonal | Yes |
Axenic | No |
Prelim. NCBI Taxon ID | 33649 |
18S rRNA | |
Importance of organism and transcriptomes | T. nitzschioides is a characteristic diatom species of phytoplankton communities of the Antarctic Circumpolar Current and its frustules are also abundant in the siliceous ooze belt. This transcriptome is part of a comparative study of the transcriptomic responses of Southern Ocean diatoms to iron limitation. |
Additional citations and references | |
Environmental Data | |
Primary citation for organism's characterization, if available | (Grunow) Mereschkowsky 1902: 78 |
Latitude | -47.86667 |
Longitude | -15.8 |
Collection date | 28-JAN-09 |
Sample collection site | Southern_Ocean |
Other collection site info | LOHAFEX station 120 |
Sample material (e.g. "seawater," "sediment," etc.) | Calanus simillimus faecal pellet |
ENVO term for habitat - primary term | Acquatic: marine |
Other environmental metadata available | further metadata available at http://www.pangaea.de |
Other environmental metadata available | further metadata available at http://www.pangaea.de |
Habitat | marine habitat |
Experimental Data | |
Date of experiment | 20-JUN-11 |
Growth medium | modified f/2 amended seawater |
Modifications to growth medium | Using trace metal solution after Morel et al. 1979. medium set up using trace metal clean conditions and procedures. |
Temperature (ºC) | 3 |
Salinty (psu) | 33.6 |
pH | 8.15 |
Light (µmol photons / m2 / sec) | 35 |
Day portion of day:night cycle in hours | 16 |
Night portion of day:night cycle in hours | 8 |
Nitrate (μmol/L) | 28 |
Ammonium (μmol/L) | .09 |
Phosphate (μmol/L) | 28.45 |
Silicate (μmol/L) | 60 |
Total Fe (nmol/L) | 11000 |
Trace elements (total) (nmol/L) | 7.3 |
Investigation type | Eukaryotes |