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Thalassionema nitzschioides L26-B

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Principle Investigator(s) Bank Beszteri
External sample IDT. nitzschioides Fe- 1
NCGR Sample IDMMETSP0158
Sample accession numberCAM_SMPL_002429
Assembly accession numberCAM_ASM_000247
Combined Assembly NameThalassionema-nitzschioides-L26_B
GenusThalassionema
Speciesnitzschioides
StrainL26-B
ClonalYes
AxenicNo
Prelim. NCBI Taxon ID33649
18S rRNA
Importance of organism and transcriptomesT. nitzschioides is a characteristic diatom species of phytoplankton communities of the Antarctic Circumpolar Current and its frustules are also abundant in the siliceous ooze belt. This transcriptome is part of a comparative study of the transcriptomic responses of Southern Ocean diatoms to iron limitation.
Additional citations and references
Environmental Data
Primary citation for organism's characterization, if available(Grunow) Mereschkowsky 1902: 78
Latitude-47.86667
Longitude-15.8
Collection date28-JAN-09
Sample collection siteSouthern_Ocean
Other collection site infoLOHAFEX station 120
Sample material (e.g. "seawater," "sediment," etc.)Calanus simillimus faecal pellet
ENVO term for habitat - primary termAcquatic: marine
Other environmental metadata availablefurther metadata available at http://www.pangaea.de
Other environmental metadata availablefurther metadata available at http://www.pangaea.de
Habitatmarine habitat
Experimental Data
Growth mediummodified f/2 amended seawater
Modifications to growth mediumUsing trace metal solution after Morel et al. 1979. medium set up using trace metal clean conditions and procedures.
Temperature (ºC)3
Salinty (psu)33.6
pH8.15
Light (µmol photons / m2 / sec)35
Day portion of day:night cycle in hours16
Night portion of day:night cycle in hours8
Nitrate (μmol/L)28
Ammonium (μmol/L).09
Phosphate (μmol/L)28.45
Silicate (μmol/L)60
Trace elements (total) (nmol/L)7.3
Investigation typeEukaryotes