Vannella sp. DIVA3 517/6/12

Downloads:

Reads

Annotations

Peptides

Contigs

CDS

Environmental Data
Principle Investigator(s)	Jan Pawlowski
External sample ID	Vannella n. sp. 517/6/12
NCGR Sample ID	MMETSP0168
Sample accession number	CAM_SMPL_000707
Assembly accession number	CAM_ASM_000044
Combined Assembly Name	N/A
Genus	Vannella
Species	sp.
Strain	DIVA3 517/6/12
Clonal	Yes
Axenic	No
Prelim. NCBI Taxon ID	95228
18S rRNA	CTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGCAACTCGTACTTGTGAAACTGCGAATGGCTCATTAAATCAGTTACAATTTATTTGATGGTACCTTACTACTTGGATAACCGTAGTAACATAGAGCTAATACATGCCAATAAGACCCGACTGTTACGGAAGGGTTGTATTTATTAGATAACAAACCAATATCCCTCGGGATTTACCGGTGATTCATAATAACTATACGGACCGCATGCCCTCGGGCGGCGGCGCTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGTATAGAGGACTACCATGGTTATAACGGGTAACGGAGAATTAGGGTTTGATTCCGGAGAGGGAGCCTGAGAGATGGCTACCACTTCTAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATATCAATGCTTTTCGTTTTCACGATTAGTAATTGGAATGAGAACAATCTAAACCCCTTATCGAGTAACAATTAGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCTAATAGCGTATATTAAAGTTGTTGCTGTTAAAAAGCTCGTAGTTGGATCTTGAGGTCTTTGCTGCTTGGGTCCGCCGGAATGGTGAGTACTCTTCAGCTGGCCTCTTCCTACTGGATCTCCGGTGCTGTCCTTAATTGGGTGGCACAGTCAACCTTCGGGTGGGCCGCTGTGCGTTCACGCTGCCGGGTGTGAGTCTGCGGAGCTGCGTGTGATGCGTGGCCGAGTGGGCCGCTCGGATCACAGCCTGGGCGTGGAGTGGGAATCCAGTTCGTTTACTTTGAGTAAATTAGAGTGTTTAAAGCAGCCTCTTGGGGCTTTGAATACATTAGCATGGGATAATRGAATAGGACTTTGGTTCTAGTTTGTTGGTTTGGAGGACTAAAGTAATGATTAATAGGGATAGTTGGGGGTACTTGTATTTAATTGTCAGAGGTGAAATTCGGTGATTTATTAAAGACAAACTTAGGCGAAAGCATATACCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCGAAGACGATCAGATACCGTCGTAGTCTTAACTATAAACTATGCCGACCAGGGATTTGAGAACGTTACTTTTTTGGATGACTTCTTCAGCACCTTGTGAGAAATCATAAGTGTTTAGGTTCAGGGGGGAGTACGGTCGCAAGTCTGAAACTTAAAGGAATTGACGGAGGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAAACTTACCAGGTCAGGACATGTGAAGGATTGACAGTCTGAGAGCACTTTCATGATTACATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCTTGCTAAATAGTGATGCTTATTCAATCCTGGATAGGTAGACCACTTCTTAGAGGGACTTTCCATTCTTCAGTGGAAGGAAGTTTGAGGCGATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATACGATCACCAAGTATACAACCTGCCTTGAGAGGGGTGGGTAATCTTCGAAACCGTATCGTGCTGGGGATAGATGGTTGTAATTTTCCATCTTGAACGAGGAACTCCTAGTAATCGTAATTCAACAGATTGCGATGATTACGTCCCTGCCCCTTGTACACACCGCCCGTCGCTGCTACCGATGAATGGTCCGGTGAACTCTTTGGATCGTGCAGATATGCTGAGCTTTCGGGTTCAGCTCTGCGTGAGAAGATGATTAAACCTTATCATTTAGAGGAAGCAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCAGAAGGATCA
Importance of organism and transcriptomes	Vannellid amoebae are one of the most important groups among Amoebozoa, as they are most widely distributed and most abundant in all habitats, including marine. The species nominated has a key phylogenetic position in vannellids, being a sister group to all other Vannella spp. The obtained transcriptome data are pioneering for Vannella and will be used for the first broadly-sampled multigene analysis of the amoebozoan phylogeny.
Additional citations and references
Primary citation for organism's characterization, if available	Kudryavtsev A, Pawlowski J, Hausmann K (2011) A survey of lobose amoebae (Amoebozoa) from the atlantic deep-sea sediments, in preparation
Latitude	-35.98917
Longitude	-49.01944
Depth (m)	4605.2
Salinity (psu)	35
Collection date	12-JUL-09
Collection time	5:24 AM
Sample collection site	Atlantic_Ocean
Other collection site info	Expedition DIVA3
Sample material (e.g. "seawater," "sediment," etc.)	Marine sediment
ENVO term for habitat - primary term	Acquatic: marine
ENVO term for habitat - secondary term	Sediment
Habitat description	abyssal plain bottom sediment, clay, aerobic
Habitat	marine habitat
Experimental Data
Date of experiment	24-MAY-11
Growth medium	seawater with wheat grains
Temperature (ºC)	20
Salinty (psu)	35
pH	7.5
Prey organism, if applicable (genus and species)	bacteria
Investigation type	Eukaryotes