Vexillifera sp. DIVA3 564/2

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Environmental Data
Principle Investigator(s)	Jan Pawlowski
External sample ID	Vexillifera n. sp. 564/2
NCGR Sample ID	MMETSP0173_2
Sample accession number	CAM_SMPL_002450
Assembly accession number	CAM_ASM_000268
Combined Assembly Name	N/A
Genus	Vexillifera
Species	sp.
Strain	DIVA3 564/2
Clonal	Yes
Axenic	No
Prelim. NCBI Taxon ID	218659
18S rRNA	CTGGTTGATTCTGCCAGTTGTCATATGCTTGTTTAAAAGATTRAAGCCATGCAAGTGTAAGTATAAACACGATTTGTACTGTGAGACTGCGAATGGCTCATTAAATCAGTAATAATTTAATCAATAGTAGTGTTTTTATTCGAAAGAAGAAAAATATAAATGGATAACTGTGGTAAATCTAGAGCTAATACATGCTTAAAAGATCAAGAATATATTGATTGCGTATATTAGATAAARAACTATGCTGTTTAAACAGAATAGATGATTCAAAATATCCRTGCAGATCGTACAATATCATCGTTTGTGGTGATGACGACAAATTGAAAAAATYTCTGCCCTATCAACTTTGGATTGTAGTGTAGTGTACTACAATGGTTTTGACGGGTAACGGGGAATTACGGTTCGATTCCGGAGAGGAAGCCTGAGAAACGGCTACCACTTCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATTCCAATACGGAGAGGTAGTGACAAAAAATAACAATGATTGGACCAAAAAGGTTAATCAATTGGAATGAGAACAAATTAAAATAATTATCGAGAATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATACGGTCAGTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTAGGGGGGAATATAAAGAGATATTTTTTAAATGAATAATTTAAAAAATATTTCATCCTTTCAAAATATCCTTATTAAACTTTAGTAAGGATTAATTTACTTTGAATAAATTAGAGTGTTTCAAACAAATTTCTTTTAATAGAAATAATATGAATAGATTAGCATGGGATAATAAAATAAGATTTTTCTTGGCACTTTTTTAGTATAGTTGTGAGAAGAAAAATAATGATTAATAGGAACGGTTGGGGGTATTCGTATTGAATTGTCAGAGGTGAAATTCATGGATTTATTCAAGACGAACATCAGCGAAAGCATTTACCAAAGACGTTTTCATTAATCAAGAACGAAAGTAGGGGGATCGAAGATGATCAGATACCGTCGTAGTCTCTACCATAAACTATGTCGACTAATTTTATTAYTTTTTTCACTAGAGTTTAGTAATAGACTCAATCGAATAATAATAAAATTTAAAAGAAATTAAAAGTATTTAGATTCTGGGGGGAGTACGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGTGTGGAACCTGCGGCTTAATTCGACTCAACACGGGGAAACTTACCAGGTCCAGACACAGGAAGGATTGACAGATTAAAGTTCTTTCTTGATTCTGTGGAAAGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCAGGTTAATTCCGTTAACGAACGAGACCTTAACTTATTTATTAGTTAATATAATTGAAATTTATTTTTGATTGTAAATTGAAATTAACTTCTTAAAAGGACATTTAATATACAAAAATTAAAGGARGTTTAAGGCAATAACAGGTCTGTGATGCCCTTTAGATGTTCTGGGCTGCACGCGCGTTACACTGAAAATTTCAATAAGTTTTCTTTTTATCTCTTCTTTTTGAATGTGATAATTTCCTGAATTGAAAAATTTAGGTAAACTTTAAATAATTTTCGTGGTGGGGATTAATAATTGTAATTTTTTATTATGAACGAGGAATACCTAGTAAGTGCAATTCATCAAATTGCGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATGAATGGTCCGGTGAAATTTTAAGATTGTCACAGAATTTTTTTTGTGATAAAAATTTAATTAAACCTTACCATTTAGAGGAAGGAGAAGTCGTAACAAGGTATYCGTAGGTGAACCTGCAGAAGGATCA
Importance of organism and transcriptomes	Vexilliferidae have a key significance for understanding the evolutionary relationships between Dactylopodida and other Discosea. The species nominated is one of the few marine amoebae isolated froom the deep sea sedimements. The obtained transcriptome data are pioneering for Vexillifera and will be used for the first broadly-sampled multigene analysis of the amoebozoan phylogeny.
Additional citations and references
Primary citation for organism's characterization, if available	Kudryavtsev A, Pawlowski J, Hausmann K (2011) A survey of lobose amoebae (Amoebozoa) from the atlantic deep-sea sediments, in preparation
Latitude	-26.64444
Longitude	-35.24361
Depth (m)	4527.1
Salinity (psu)	35
Collection date	24-JUL-09
Collection time	02:32 AM
Sample collection site	Atlantic_Ocean
Other collection site info	Expedition DIVA3
Sample material (e.g. "seawater," "sediment," etc.)	Marine sediment
ENVO term for habitat - primary term	Acquatic: marine
ENVO term for habitat - secondary term	Sediment
Habitat description	abyssal plain bottom sediment, clay with rocks, aerobic
Other environmental metadata available	no other types of environmental metadata available
Other environmental metadata available	no other types of environmental metadata available
Habitat	marine habitat
Experimental Data
Date of experiment	10-JUN-11
Growth medium	seawater with wheat grains
Temperature (ºC)	20
Salinty (psu)	35
pH	7.5
Prey organism, if applicable (genus and species)	bacteria
Investigation type	Eukaryotes