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Proboscia alata PI-D3

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Principle Investigator(s) Bank Beszteri
External sample IDP. alata CTR 1
NCGR Sample IDMMETSP0174
Sample accession numberCAM_SMPL_002451
Assembly accession numberCAM_ASM_000269
Combined Assembly NameProboscia-alata-PI_D3
GenusProboscia
Speciesalata
StrainPI-D3
ClonalYes
AxenicNo
Prelim. NCBI Taxon ID216777
18S rRNA
Importance of organism and transcriptomesP. alata is a cosmopolitan species that can occasionally form large blooms. This transcriptome is part of a comparative study of the transcriptomic responses of Southern Ocean diatoms to iron limitation.
Additional citations and references
Environmental Data
Primary citation for organism's characterization, if available(Brightwell) Sundstrom 1986: 99, figs 258-266
Latitude-64.0038
Longitude-.0025
Collection date20-JAN-08
Sample collection siteSouthern_Ocean
Other collection site infoexpedition ANT-XXIV / 2
Sample material (e.g. "seawater," "sediment," etc.)seawater
ENVO term for habitat - primary termAcquatic: marine
Other environmental metadata availablefurther metadata available at http://www.pangaea.de
Other environmental metadata availablefurther metadata available at http://www.pangaea.de
Habitatmarine habitat
Experimental Data
Date of experiment26-MAY-11
Growth mediummodified f/2 amended seawater
Modifications to growth mediumUsing trace metal solution after Morel et al. 1979. medium set up using trace metal clean conditions and procedures.
Temperature (ºC)3
Salinty (psu)33.6
pH8.15
Light (µmol photons / m2 / sec)35
Day portion of day:night cycle in hours16
Night portion of day:night cycle in hours8
Nitrate (μmol/L)28
Ammonium (μmol/L).09
Phosphate (μmol/L)28.45
Silicate (μmol/L)60
Total Fe (nmol/L)11000
Trace elements (total) (nmol/L)7.3
Investigation typeEukaryotes