Marine Microbial Eukaryote Transcriptome Sequencing Project
Home :: List of Publicly Available Datasets :: Pseudokeronopsis sp. OXSARD2
Pseudokeronopsis sp. OXSARD2
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| Principle Investigator(s) | Denis Lynn |
|---|---|
| External sample ID | |
| NCGR Sample ID | MMETSP0211 |
| Sample accession number | CAM_SMPL_002469 |
| Assembly accession number | CAM_ASM_000287 |
| Combined Assembly Name | N/A |
| Genus | Pseudokeronopsis |
| Species | sp. |
| Strain | OXSARD2 |
| Clonal | Yes |
| Axenic | No |
| Prelim. NCBI Taxon ID | 311385 |
| 18S rRNA | |
| Importance of organism and transcriptomes | ############################################################################################################################################################################################################################################################### |
| Additional citations and references | Guella, G., Frassanito, R., Mancini, I., Sandron, T., Modeo, L., Verni, F., Dini, F., and Petroni, G. (2010). Keronopsamides, a new class of pigments from marine ciliates. Eur J Org Chem, 3:427--434 |
| Environmental Data | |
| Primary citation for organism's characterization, if available | Modeo L., Frassanito R., Andreoli I., Carducci D., Guella G., Rosati G., Verni F., Dini F., Petroni G. (2008). Multidisciplinary characterization of two new species of colored stichotrichs belonging to the genus Pseudokeronopsis (Ciliophora, Spirotrichea) which produce novel secondary metabolites. 27? Convegno Nazionale della Societa Italiana di Protistologia onlus (SIP onlus). 11-12 Aprile 2008. Camerino (MC). Atti del Convegno. |
| Latitude | 38.54 |
| Longitude | 8.46 |
| Salinity (psu) | 33 |
| Temperature (ºC) | 19 |
| pH | 8 |
| Collection date | 01-APR-99 |
| Collection time | 11:00 PM |
| Sample collection site | Tyrrhenian Sea |
| Other collection site info | ?Torre di Piscinni? (Cagliari, Italy) |
| Sample material (e.g. "seawater," "sediment," etc.) | Seawater and sediment |
| ENVO term for habitat - primary term | Acquatic: marine |
| ENVO term for habitat - secondary term | Other |
| Habitat description | marine tidal pools |
| Other environmental metadata available | no other types of environmental metadata available |
| Other environmental metadata available | no other types of environmental metadata available |
| Habitat | marine habitat |
| Country | ITALY |
| Experimental Data | |
| Date of experiment | 01-FEB-12 |
| Growth medium | autoclaved artificial seawater (Red Sea Salt, Red Sea, http://www.redseafish.com) |
| Temperature (ºC) | 19 |
| Salinty (psu) | 33 |
| pH | 8.2 |
| Light (µmol photons / m2 / sec) | 300 |
| Day portion of day:night cycle in hours | 12 |
| Night portion of day:night cycle in hours | 12 |
| Prey organism, if applicable (genus and species) | Pheodactylum tricornutum |
| Investigation type | Eukaryotes |
| Other experimental metadata available | Cells treated with 0.1 mg/ml ampicillin overnigth and then washed in autoclaved seawater |