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Amphora coffeaeformis CCMP127

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Principle Investigator(s) Peter Stief
External sample IDAc-O+N
NCGR Sample IDMMETSP0316
Sample accession numberCAM_SMPL_002502
Assembly accession numberCAM_ASM_000320
Combined Assembly NameAmphora-coffeaeformis-CCMP127
GenusAmphora
Speciescoffeaeformis
StrainCCMP127
ClonalUnknown
AxenicYes
Prelim. NCBI Taxon ID265554
18S rRNA
Importance of organism and transcriptomesA. coffeaformis is the first phototrophic eukaryote shown to perform dissimilatory nitrate reduction (Kamp et al. 2011, PNAS, doi:10.1073/pnas.1015744108). Transcriptome of anoxic treatment with nitrate.
Additional citations and references
Environmental Data
Primary citation for organism's characterization, if availableAgardh C.A. 1827. Aufzahlung einiger in der osterreichischen Landern gefundenen neuen Gattungen und Arten von Algen, nebst ihrer Diagnostik und beigefugten Bemerkungen. Flora 10: 625-640.
Experimental Data
Date of experiment15-APR-11
Growth mediumf/2 + silicate
Modifications to growth mediumf/2 + silicate, adjusted to 1 mM nitrate and amended with 200 ?M acetate
Temperature (ºC)15
Salinty (psu)35
pH8
Night portion of day:night cycle in hours24
Nitrate (μmol/L)1000
Phosphate (μmol/L)36
Silicate (μmol/L)106
Trace elements (total) (nmol/L)1000