Marine Microbial Eukaryote Transcriptome Sequencing Project
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Amphora coffeaeformis CCMP127
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| Principle Investigator(s) | Peter Stief |
|---|---|
| External sample ID | Ac+L+O+N |
| NCGR Sample ID | MMETSP0318_2 |
| Sample accession number | CAM_SMPL_002506 |
| Assembly accession number | CAM_ASM_000324 |
| Combined Assembly Name | Amphora-coffeaeformis-CCMP127 |
| Genus | Amphora |
| Species | coffeaeformis |
| Strain | CCMP127 |
| Clonal | Unknown |
| Axenic | Yes |
| Prelim. NCBI Taxon ID | 265554 |
| 18S rRNA | |
| Importance of organism and transcriptomes | A. coffeaformis is the first phototrophic eukaryote shown to perform dissimilatory nitrate reduction (Kamp et al. 2011, PNAS, doi:10.1073/pnas.1015744108). Transcriptome of oxic control in the light and with nitrate. |
| Additional citations and references | |
| Environmental Data | |
| Primary citation for organism's characterization, if available | Agardh C.A. 1827. Aufzahlung einiger in der osterreichischen Landern gefundenen neuen Gattungen und Arten von Algen, nebst ihrer Diagnostik und beigefugten Bemerkungen. Flora 10: 625-640. |
| Experimental Data | |
| Date of experiment | 15-APR-11 |
| Growth medium | f/2 + silicate |
| Modifications to growth medium | f/2 + silicate, adjusted to 1 mM nitrate |
| Temperature (ºC) | 15 |
| Salinty (psu) | 35 |
| pH | 8 |
| Light (µmol photons / m2 / sec) | 160 |
| Day portion of day:night cycle in hours | 14 |
| Night portion of day:night cycle in hours | 10 |
| Nitrate (μmol/L) | 1000 |
| Phosphate (μmol/L) | 36 |
| Silicate (μmol/L) | 106 |
| Trace elements (total) (nmol/L) | 1000 |