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Skeletonema japonicum CCMP2506

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Principle Investigator(s) Tatiana Rynearson
External sample IDCCMP2506-replete- day
NCGR Sample IDMMETSP0593
Sample accession numberCAM_SMPL_002854
Assembly accession numberCAM_ASM_000672
Combined Assembly NameN/A
GenusSkeletonema
Speciesjaponicum
StrainCCMP2506
ClonalYes
AxenicNo
Prelim. NCBI Taxon ID267983
18S rRNA
Importance of organism and transcriptomesSpecies in the genus Skeletonema form a group of important bloom-forming diatoms widely distributed along coasts and in estuaries
Additional citations and references###############################################################################################################################################################################################################################################################
Environmental Data
Primary citation for organism's characterization, if availableSarno, D., Kooistra, W.H.C.F., Medlin, L.K., Percopo, I. & Zingone, A. (2005). Diversity in the genus Skeletonema (Bacillariophyceae): II. An assessment of the taxonomy of S. costatum-like species, with the description of four new species. Journal of Phycology 41: 151-176.
Latitude34.3
Longitude132.4
Depth (m).5
Collection date01-OCT-02
Sample collection siteSeto Inland Sea
Other collection site infoHiroshima Bay
Sample material (e.g. "seawater," "sediment," etc.)Seawater
ENVO term for habitat - primary termAcquatic: marine
ENVO term for habitat - secondary termNot Applicable
Habitat descriptionCoastal Waters
Habitatmarine habitat
CountryJAPAN
Experimental Data
Date of experiment09-DEC-11
Growth mediumf/2 amended seawater
Temperature (ºC)14
Salinty (psu)36
pH7.9
Light (µmol photons / m2 / sec)180
Day portion of day:night cycle in hours12
Night portion of day:night cycle in hours12
Nitrate (μmol/L)883
Phosphate (μmol/L)36.3
Silicate (μmol/L)107
Investigation typeEukaryotes
Other experimental metadata availableAxenic