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Extubocellulus spinifer CCMP396
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Principle Investigator(s) | Sarah Smith |
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External sample ID | E.spinifer_Si-limited |
NCGR Sample ID | MMETSP0697 |
Sample accession number | CAM_SMPL_002817 |
Assembly accession number | CAM_ASM_000635 |
Combined Assembly Name | Extubocellulus-spinifer-CCMP396 |
Genus | Extubocellulus |
Species | spinifer |
Strain | CCMP396 |
Clonal | Yes |
Axenic | Yes |
Prelim. NCBI Taxon ID | 265572 |
18S rRNA | |
Importance of organism and transcriptomes | Extubocellulus spinifer is an unusual tiny benthic centric diatom that is common in the marine coastal environment. Little is known about the evolution, biology, or ecological significance of this diatom. |
Additional citations and references | |
Environmental Data | |
Primary citation for organism's characterization, if available | Hasle, G.R., Stosch, H.A. von & Syvertsen, E.E. (1983). Cymatosiraceae, a new diatom family. Bacillaria 6: 9-156. |
Latitude | 31.3172 |
Longitude | 113.56 |
Collection date | 01-JAN-68 |
Sample collection site | Gulf of California (Sea of Cortes) |
ENVO term for habitat - primary term | Acquatic: marine |
Habitat | marine habitat |
Country | MEXICO |
Experimental Data | |
Date of experiment | 10-SEP-11 |
Growth medium | ASW |
Modifications to growth medium | Cells grown exponentially in ASW were harvested by centrifugation and re-suspended in ASW with no SiO3 |
Temperature (ºC) | 20 |
pH | 8 |
Light (µmol photons / m2 / sec) | 200 |
Day portion of day:night cycle in hours | 24 |
Nitrate (μmol/L) | 2.97 |
Phosphate (μmol/L) | .2 |
Trace elements (total) (nmol/L) | 19.73 |
Investigation type | Eukaryotes |
Other experimental metadata available | cell concentration, neutral lipid content (fluorometrically determined with Bodipy) |