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Extubocellulus spinifer CCMP396

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Principle Investigator(s) Sarah Smith
External sample IDE.spinifer_Nocodazole
NCGR Sample IDMMETSP0699
Sample accession numberCAM_SMPL_002827
Assembly accession numberCAM_ASM_000645
Combined Assembly NameExtubocellulus-spinifer-CCMP396
GenusExtubocellulus
Speciesspinifer
StrainCCMP396
ClonalYes
AxenicYes
Prelim. NCBI Taxon ID265572
18S rRNA
Importance of organism and transcriptomesExtubocellulus spinifer is an unusual tiny benthic centric diatom that is common in the marine coastal environment. Little is known about the evolution, biology, or ecological significance of this diatom.
Additional citations and references
Environmental Data
Primary citation for organism's characterization, if availableHasle, G.R., Stosch, H.A. von & Syvertsen, E.E. (1983). Cymatosiraceae, a new diatom family. Bacillaria 6: 9-156.
Latitude31.3172
Longitude113.56
Collection date01-JAN-68
Sample collection siteGulf of California (Sea of Cortes)
ENVO term for habitat - primary termAcquatic: marine
Habitatmarine habitat
CountryMEXICO
Experimental Data
Date of experiment10-SEP-11
Growth mediumASW
Modifications to growth mediumCells grown exponentially in ASW were harvested by centrifugation and re-suspended in fresh ASW with 2.5mg L-1 nocodazole
Temperature (ºC)20
pH8
Light (µmol photons / m2 / sec)200
Day portion of day:night cycle in hours24
Nitrate (μmol/L)2.97
Phosphate (μmol/L).2
Silicate (μmol/L).42
Trace elements (total) (nmol/L)19.73
Investigation typeEukaryotes
Other experimental metadata availablecell concentration, neutral lipid content (fluorometrically determined with Bodipy)