Marine Microbial Eukaryote Transcriptome Sequencing Project
Home :: List of Publicly Available Datasets :: Fragilariopsis kerguelensis L26-C5
Fragilariopsis kerguelensis L26-C5
Downloads:
| Principle Investigator(s) | Adrian Marchetti |
|---|---|
| External sample ID | F.kerg_-Fe_LL |
| NCGR Sample ID | MMETSP0735 |
| Sample accession number | CAM_SMPL_002719 |
| Assembly accession number | CAM_ASM_000537 |
| Combined Assembly Name | Fragilariopsis-kerguelensis-L26_C5 |
| Genus | Fragilariopsis |
| Species | kerguelensis |
| Strain | L26-C5 |
| Clonal | Yes |
| Axenic | No |
| Prelim. NCBI Taxon ID | 186038 |
| 18S rRNA | |
| Importance of organism and transcriptomes | Fragilariopsis kerguelensis is an ecologically important pennate diatom in Southern Ocean waters. It is a dominant member of the diatom community and is well preserved in the sedimentary record making it a useful organism for paleooceanographic proxies |
| Additional citations and references | |
| Environmental Data | |
| Primary citation for organism's characterization, if available | Hasle, G.R. (1965). Nitzschia and Fragilariopsis species studied in the light and electron microscopes. III. The genus Fragilariopsis. Skrifter Utgitt av Det Norske Videnskaps-Akademi i Oslo I. Mat.-Naturv. Klasse Ny Serie, 21:1-49. |
| Latitude | -48 |
| Longitude | -16 |
| Other collection site info | L26-C5 is an offspring of mating experiments during the Lohafex Iron Enrichment Experiment |
| Sample material (e.g. "seawater," "sediment," etc.) | seawater |
| Habitat description | polar open ocean mixed layer |
| Habitat | marine habitat |
| Experimental Data | |
| Date of experiment | 01-MAR-12 |
| Growth medium | Aquil |
| Modifications to growth medium | Standard Aquil with 100 uM EDTA |
| Temperature (ºC) | 4 |
| Salinty (psu) | 32 |
| pH | 8.1 |
| Light (µmol photons / m2 / sec) | 10 |
| Day portion of day:night cycle in hours | 24 |
| Nitrate (μmol/L) | 300 |
| Phosphate (μmol/L) | 10 |
| Silicate (μmol/L) | 200 |
| Total Fe (nmol/L) | 3.1 |
| Trace elements (total) (nmol/L) | 384 |
| Investigation type | Eukaryotes |
| Other experimental metadata available | Growth Rate = 0.11 d-1 |