Marine Microbial Eukaryote Transcriptome Sequencing Project
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Pseudo-nitzschia fraudulenta WWA7
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| Principle Investigator(s) | Bethany Jenkins |
|---|---|
| External sample ID | Si-limited 750 ppm |
| NCGR Sample ID | MMETSP0853 |
| Sample accession number | CAM_SMPL_002822 |
| Assembly accession number | CAM_ASM_000640 |
| Combined Assembly Name | Pseudo_nitzschia-fradulenta-WWA7 |
| Genus | Pseudo-nitzschia |
| Species | fraudulenta |
| Strain | WWA7 |
| Clonal | Yes |
| Axenic | No |
| Prelim. NCBI Taxon ID | 183588 |
| 18S rRNA | |
| Importance of organism and transcriptomes | ############################################################################################################################################################################################################################################################### |
| Additional citations and references | |
| Environmental Data | |
| Latitude | 34.0847 |
| Longitude | -119.05 |
| Depth (m) | 1 |
| Salinity (psu) | 35 |
| Temperature (ºC) | 14 |
| Collection date | 27-MAR-10 |
| Collection time | 06:30 AM |
| Sample collection site | Pacific_Ocean |
| Sample material (e.g. "seawater," "sediment," etc.) | seawater |
| ENVO term for habitat - primary term | Acquatic: marine |
| ENVO term for habitat - secondary term | Other |
| Habitat description | small cove with cobblestone/sand bottom |
| Other environmental metadata available | no other types of environmental metadata available |
| Other environmental metadata available | no other types of environmental metadata available |
| Habitat | marine habitat |
| Country | UNITED STATES |
| Experimental Data | |
| Date of experiment | 10-AUG-10 |
| Growth medium | f/2 enriched seawater |
| Modifications to growth medium | f/2 for all nutirents except the final concentration of sodium metasilicate was 10.6 uM |
| Temperature (ºC) | 16 |
| Salinty (psu) | 35 |
| pH | 7.9 |
| Light (µmol photons / m2 / sec) | 90 |
| Day portion of day:night cycle in hours | 12 |
| Night portion of day:night cycle in hours | 12 |
| Nitrate (μmol/L) | 643 |
| Phosphate (μmol/L) | 32 |
| Silicate (μmol/L) | 10.6 |
| CO2 (ppm) | 750 |
| Investigation type | Eukaryotes |