Marine Microbial Eukaryote Transcriptome Sequencing Project
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Pelagococcus subviridis CCMP1429
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| Principle Investigator(s) | Christopher Gobler |
|---|---|
| External sample ID | Pelagomonas replete |
| NCGR Sample ID | MMETSP0882 |
| Sample accession number | CAM_SMPL_002842 |
| Assembly accession number | CAM_ASM_000660 |
| Combined Assembly Name | Pelagococcus-subviridis-CCMP1429 |
| Genus | Pelagococcus |
| Species | subviridis |
| Strain | CCMP1429 |
| Clonal | Unknown |
| Axenic | No |
| Prelim. NCBI Taxon ID | 35679 |
| 18S rRNA | |
| Importance of organism and transcriptomes | Pelagophytes such as Pelagococcus subviridis represent a common but poorly characterized component of ocean microeukaryotic communities. |
| Additional citations and references | |
| Environmental Data | |
| Primary citation for organism's characterization, if available | Journal of Phycology, Volume 29, Issue 5, pages 701?715, October 1993ULTRASTRUCTURE AND 18S RRNA GENE SEQUENCE FOR PELAGOMONAS CALCEOLATA GEN. ET SP. NOV. AND THE DESCRIPTION OF A NEW ALGAL CLASS, THE PELAGOPHYCEAE CLASSIS NOV |
| Latitude | 30.8333 |
| Longitude | -136.8333 |
| Depth (m) | 5 |
| Salinity (psu) | 35 |
| Temperature (ºC) | 25 |
| pH | 8.1 |
| Collection date | 17-FEB-73 |
| Collection time | 12:00 PM |
| Sample collection site | Pacific_Ocean |
| Sample material (e.g. "seawater," "sediment," etc.) | seawater |
| Chlorophyll (mg/m3) | 1 |
| ENVO term for habitat - primary term | Acquatic: marine |
| ENVO term for habitat - secondary term | Not Applicable |
| Habitat description | open ocean mixed layer |
| Habitat | marine habitat |
| Country | UNITED STATES |
| Experimental Data | |
| Date of experiment | 25-SEP-11 |
| Growth medium | GSe media |
| Modifications to growth medium | Ammonium in place of nitrate |
| Temperature (ºC) | 22 |
| Salinty (psu) | 32 |
| pH | 7.8 |
| Light (µmol photons / m2 / sec) | 90 |
| Day portion of day:night cycle in hours | 12 |
| Night portion of day:night cycle in hours | 12 |
| Ammonium (μmol/L) | 80 |
| Phosphate (μmol/L) | 4 |
| Dissolved oxygen (ml/L) | 8 |
| Total Fe (nmol/L) | 1100 |
| DOC (mg/L) | 2 |
| List of amino acids and concentrations, with units | none |
| Trace elements (total) (nmol/L) | 1004 |
| CO2 (ppm) | 400 |
| Prey organism, if applicable (genus and species) | none |
| Pressure (atm) | 1 |
| Investigation type | Eukaryotes |
| Other experimental metadata available | CCMP1756 is the axenic version of CCMP1214 |