Pelagococcus subviridis CCMP1429

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Environmental Data
Principle Investigator(s)	Christopher Gobler
External sample ID	Pelagococcus N-limited
NCGR Sample ID	MMETSP0883
Sample accession number	CAM_SMPL_002843
Assembly accession number	CAM_ASM_000661
Combined Assembly Name	Pelagococcus-subviridis-CCMP1429
Genus	Pelagococcus
Species	subviridis
Strain	CCMP1429
Clonal	Unknown
Axenic	No
Prelim. NCBI Taxon ID	35679
18S rRNA	AACCTGGTTGATCCTGCCAGTAGYCATACGCTCGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGCGATCTTGTACTGTGAAACTGCGAATGGCTCATTATATCAGTTATAGTTTATTTGATAGTCCCTTACTACATGGATACCCGTAGTAATTCTAGAGCTAATACATGCATCGACTCCCAACTGCTTCGGCGGACGGGACGTATTTATTAGATTGAAACCAATGCGGGGGAGACCCCGGTATTGTGGTGAGTCATGATAACTTTGCGAATCGCATGGCCTTGTGCCGGCGATGGATCATTCAAGTTTCTGCCCTATCAGCTTTGGATGGTAGGGTATTGGCCTACCATGGCATTAACGGGTAACGGAGAATTGGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAATTACCCAATCCTGACACAGGGAGGTARTGACAAGAAATAACAATGCCGGGCTCTTACGAGTCTGGCAATTGGAATGAGAACAATTTAAATCCCTTATCGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAATGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTCCTGGCCTGGGGTAGCCGGTCCGCCTTGCAAAAGGTGCGCACTGTGCGGCCTCGGCCATCCTTGAGAAGAGCTGTTCTGGCATTCAGTTGTCGGGGCGGGGATTCTCGACGTTTACTGTGAAAAAATCAGAGTGTTCAAAGCAGGCTTACGCCTTGAATACATTAGCATGGAATAATGAGATAGGACCTTGGCGGTCTATTTTGTTGGTTTGCACGCCGAGGTAATGATTAAAAGGGACGGTTGGGGTTCTTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATGGAAGACGAACTGCTGCGAAAGCGTCGAACAAGGACGTTCTCATTAATCAAGAACGAAAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCATAAACTATGCCGATTCAGGATTGGCGGTCGTTTGTTCTCGACTCCGTCAGCACTGTATGAGAAATCAAAATCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGAAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGTAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCCCCGCCTGCTAAATAGGTACGGGAATGCGCTTGCATTGCCGTAACTTCTTAGAGGGACTTTCGGTGACTAACCGAAGGAAGCTGGGGGCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGGCACACGCAACGAGTCTATCACCTTGGTCGGCAGGCCTGGGTAATCTGTGAACGTGTGCCGTGATTGGGATTGATTGTTGCAATTTTCAATCATGAACGAGGAATTCCTAGTAAACGCGAGTCATCAGCTCGCATTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCACCTACCGATTGAATGGTTCGGTGAAATCTCAGGACCGCGGCACGCAAGCTTCACGGCGAACGTGCCTTGGGAATCTGATTAAACCTCACTATTTAGAGGAAGGTGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCAGAAGGATCA
Importance of organism and transcriptomes	Pelagophytes such as Pelagococcus subviridis represent a common but poorly characterized component of ocean microeukaryotic communities.
Additional citations and references
Primary citation for organism's characterization, if available	AN ABERRANT CHRYSOPHYCEAN ALGA PELAGOCOCCUS SUBVIRIDIS GEN. NOV. ... FROM THE NORTH PACIFIC OCEAN. Journal of Phycology, 13: 259?266
Latitude	49.9166
Longitude	-145.1166
Salinity (psu)	32.6
Temperature (ºC)	6
pH	8.1
Collection date	01-MAY-72
Collection time	12:00 PM
Sample collection site	Pacific_Ocean
Other collection site info	Collected along the Great Circle Route traveled by American Mail Line ships from Yokohama to Seattle.
Sample material (e.g. "seawater," "sediment," etc.)	seawater
ENVO term for habitat - primary term	Acquatic: marine
ENVO term for habitat - secondary term	Not Applicable
Habitat description	open ocean mixed layer
Other environmental metadata available	Representative data from the location of collection is available
Other environmental metadata available	Representative data from the location of collection is available
Habitat	marine habitat
Country	UNITED STATES
Experimental Data
Date of experiment	25-SEP-11
Growth medium	GSe media
Modifications to growth medium	Ammonium in place of nitrate
Temperature (ºC)	15
Salinty (psu)	32
pH	7.8
Light (µmol photons / m2 / sec)	90
Day portion of day:night cycle in hours	12
Night portion of day:night cycle in hours	12
Ammonium (μmol/L)	20
Phosphate (μmol/L)	4
Dissolved oxygen (ml/L)	8
Total Fe (nmol/L)	1100
DOC (mg/L)	2
List of amino acids and concentrations, with units	none
Trace elements (total) (nmol/L)	1004
CO2 (ppm)	400
Prey organism, if applicable (genus and species)	none
Pressure (atm)	1
Investigation type	Eukaryotes