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Pelagomonas calceolata CCMP1756
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Principle Investigator(s) | Christopher Gobler |
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External sample ID | Pelagomonas light limited |
NCGR Sample ID | MMETSP0889 |
Sample accession number | CAM_SMPL_002714 |
Assembly accession number | CAM_ASM_000532 |
Combined Assembly Name | Pelagomonas-calceolata-CCMP1756 |
Genus | Pelagomonas |
Species | calceolata |
Strain | CCMP1756 |
Clonal | Unknown |
Axenic | No |
Prelim. NCBI Taxon ID | 35677 |
18S rRNA | |
Importance of organism and transcriptomes | Pelagophytes such as Pelagomonas calceolata represent a common but poorly characterized component of ocean microeukaryotic communities. |
Additional citations and references | |
Environmental Data | |
Primary citation for organism's characterization, if available | Journal of Phycology, Volume 29, Issue 5, pages 701?715, October 1993ULTRASTRUCTURE AND 18S RRNA GENE SEQUENCE FOR PELAGOMONAS CALCEOLATA GEN. ET SP. NOV. AND THE DESCRIPTION OF A NEW ALGAL CLASS, THE PELAGOPHYCEAE CLASSIS NOV |
Latitude | 30.8333 |
Longitude | -136.8333 |
Depth (m) | 5 |
Salinity (psu) | 35 |
Temperature (ºC) | 25 |
pH | 8.1 |
Collection date | 17-FEB-73 |
Collection time | 12:00 PM |
Sample collection site | Pacific_Ocean |
Sample material (e.g. "seawater," "sediment," etc.) | seawater |
Chlorophyll (mg/m3) | 1 |
ENVO term for habitat - primary term | Acquatic: marine |
ENVO term for habitat - secondary term | Not Applicable |
Habitat description | open ocean mixed layer |
Other environmental metadata available | Representative data from the location of collection is available |
Other environmental metadata available | Representative data from the location of collection is available |
Habitat | marine habitat |
Country | UNITED STATES |
Experimental Data | |
Date of experiment | 19-AUG-11 |
Growth medium | GSe media |
Modifications to growth medium | Ammonium in place of nitrate |
Temperature (ºC) | 22 |
Salinty (psu) | 32 |
pH | 7.8 |
Light (µmol photons / m2 / sec) | 6 |
Day portion of day:night cycle in hours | 12 |
Night portion of day:night cycle in hours | 12 |
Ammonium (μmol/L) | 100 |
Phosphate (μmol/L) | 4 |
Dissolved oxygen (ml/L) | 8 |
Total Fe (nmol/L) | 1100 |
DOC (mg/L) | 2 |
List of amino acids and concentrations, with units | none |
Trace elements (total) (nmol/L) | 1004 |
CO2 (ppm) | 400 |
Prey organism, if applicable (genus and species) | none |
Pressure (atm) | 1 |
Investigation type | Eukaryotes |
Other experimental metadata available | CCMP1756 is the axenic version of CCMP1214 |