Marine Microbial Eukaryote Transcriptome Sequencing Project
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Aureoumbra lagunensis CCMP1510
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| Principle Investigator(s) | Christopher Gobler |
|---|---|
| External sample ID | Aureoumbra light limited |
| NCGR Sample ID | MMETSP0893 |
| Sample accession number | CAM_SMPL_002721 |
| Assembly accession number | CAM_ASM_000539 |
| Combined Assembly Name | Aureoumbra-lagunensis-CCMP1510 |
| Genus | Aureoumbra |
| Species | lagunensis |
| Strain | CCMP1510 |
| Clonal | Yes |
| Axenic | Unknown |
| Prelim. NCBI Taxon ID | 44058 |
| 18S rRNA | |
| Importance of organism and transcriptomes | Pelagophytes such as Aureoumbra lagunensis represent a common but poorly characterized component of ocean microeukaryotic communities. In addition, this species is notorious for its ability to form harmful brown tides in US Gulf Coast estuaries. |
| Additional citations and references | Gobler, C.J., and Sunda, W.G. 2006. Brown tides. In: Graneli, Turner, J.T. (eds), The Ecology of Harmful Algae, Springer-Verlag, pages 111-123 |
| Environmental Data | |
| Primary citation for organism's characterization, if available | DeYoe, H.R., Stockwell, D.A., Bidigare, R.R., Latasa, M., Johnson, P.W., Hargraves, P.E., Suttle, C.A., 1997. Description and characterization of the algal species Aureoumbra lagunensis gen. et sp. nov. and referral of Aureoumbra and Aureococcus to the Pelagophyceae. J. Phycol. 33, 1042-1048. |
| Latitude | 27.4708 |
| Longitude | -97.32 |
| Depth (m) | 1 |
| Salinity (psu) | 40 |
| Temperature (ºC) | 30 |
| pH | 8 |
| Collection date | 01-JAN-92 |
| Collection time | 12:00 PM |
| Sample collection site | OTHER |
| Other collection site info | Bird Island Station, Laguna Madre, Texas USA |
| Sample material (e.g. "seawater," "sediment," etc.) | seawater |
| ENVO term for habitat - primary term | Aquatic: marine |
| ENVO term for habitat - secondary term | Not Applicable |
| Habitat description | Estuarine |
| Other environmental metadata available | None |
| Other environmental metadata available | None |
| Habitat | marine habitat |
| Country | UNITED STATES |
| Experimental Data | |
| Date of experiment | 01-AUG-11 |
| Growth medium | GSe media |
| Modifications to growth medium | Ammonium in place of nitrate |
| Temperature (ºC) | 22 |
| Salinty (psu) | 32 |
| pH | 7.8 |
| Light (µmol photons / m2 / sec) | 7 |
| Day portion of day:night cycle in hours | 12 |
| Night portion of day:night cycle in hours | 12 |
| Ammonium (μmol/L) | 100 |
| Phosphate (μmol/L) | 5 |
| Dissolved oxygen (ml/L) | 8 |
| Total Fe (nmol/L) | 1100 |
| DOC (mg/L) | 2 |
| List of amino acids and concentrations, with units | none |
| Trace elements (total) (nmol/L) | 1004 |
| CO2 (ppm) | 400 |
| Prey organism, if applicable (genus and species) | none |
| Pressure (atm) | 1 |
| Investigation type | Eukaryotes |
| Other experimental metadata available | CCMP1509 is the axenic version of CCMP1510 |