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Thalassiosira rotula GSO102
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Principle Investigator(s) | Tatiana Rynearson |
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External sample ID | GSO102-Fe lim |
NCGR Sample ID | MMETSP0911 |
Sample accession number | CAM_SMPL_003106 |
Assembly accession number | CAM_ASM_000824 |
Combined Assembly Name | Thalassiosira-rotula-GSO102 |
Genus | Thalassiosira |
Species | rotula |
Strain | GSO102 |
Clonal | Yes |
Axenic | Yes |
Prelim. NCBI Taxon ID | 49265 |
18S rRNA | |
Importance of organism and transcriptomes | Thalassiosira rotula is a globally important, bloom forming species found in diverse ecosystems throughout the world. This species is comprised of at least three lineages that are differentially distributed throughout the globe. Whittaker, KA, Rignanese DR, Olson RJ, Rynearson TA. 2012. Molecular subdivision of the marine diatom Thalassiosira rotula in relation to geographic distribution, genome size, and physiology. BMC Evolutionary Biology. 12:209. |
Additional citations and references | |
Environmental Data | |
Primary citation for organism's characterization, if available | Meunier A: Microplancton des Mers de Berents et de Kara. Duc d'Orleans, Champagne Artique de 1907 1910(Atlas of pls I-XXXVII):1-355 |
Latitude | 48.629353 |
Longitude | -122.957542 |
Depth (m) | .5 |
Collection date | 20-AUG-11 |
Sample collection site | Pacific_Ocean |
Sample material (e.g. "seawater," "sediment," etc.) | Seawater |
ENVO term for habitat - primary term | Acquatic: marine |
Habitat description | Coastal waters |
Habitat | marine habitat |
Country | UNITED STATES |
Experimental Data | |
Date of experiment | 01-OCT-12 |
Growth medium | F/2 amended seawater |
Modifications to growth medium | F/2: 4nM Fe, 12.5um EDTA |
Temperature (ºC) | 20 |
Salinty (psu) | 35 |
pH | 8.3 |
Light (µmol photons / m2 / sec) | 112 |
Day portion of day:night cycle in hours | 24 |
Nitrate (μmol/L) | 882 |
Ammonium (μmol/L) | 100 |
Phosphate (μmol/L) | 38.6 |
Silicate (μmol/L) | 106 |
Total Fe (nmol/L) | 4 |
Investigation type | Eukaryotes |
Other experimental metadata available | 12.5um EDTA |