Home :: List of Publicly Available Datasets :: Thalassiosira rotula GSO102

Thalassiosira rotula GSO102

Downloads:


Principle Investigator(s) Tatiana Rynearson
External sample IDGSO102-Fe lim
NCGR Sample IDMMETSP0912
Sample accession numberCAM_SMPL_003108
Assembly accession numberCAM_ASM_000826
Combined Assembly NameThalassiosira-rotula-GSO102
GenusThalassiosira
Speciesrotula
StrainGSO102
ClonalYes
AxenicYes
Prelim. NCBI Taxon ID49265
18S rRNA
Importance of organism and transcriptomesThalassiosira rotula is a globally important, bloom forming species found in diverse ecosystems throughout the world. This species is comprised of at least three lineages that are differentially distributed throughout the globe. Whittaker, KA, Rignanese DR, Olson RJ, Rynearson TA. 2012. Molecular subdivision of the marine diatom Thalassiosira rotula in relation to geographic distribution, genome size, and physiology. BMC Evolutionary Biology. 12:209.
Additional citations and references
Environmental Data
Primary citation for organism's characterization, if availableMeunier A: Microplancton des Mers de Berents et de Kara. Duc d'Orleans, Champagne Artique de 1907 1910(Atlas of pls I-XXXVII):1-355
Latitude48.629353
Longitude-122.957542
Depth (m).5
Collection date20-AUG-11
Sample collection sitePacific_Ocean
Sample material (e.g. "seawater," "sediment," etc.)Seawater
ENVO term for habitat - primary termAcquatic: marine
Habitat descriptionCoastal waters
Habitatmarine habitat
CountryUNITED STATES
Experimental Data
Date of experiment01-OCT-12
Growth mediumF/2 amended seawater
Modifications to growth mediumF/2: 4nM Fe, 12.5um EDTA, 0.4uM Phosphate
Temperature (ºC)20
Salinty (psu)35
pH8.3
Light (µmol photons / m2 / sec)112
Day portion of day:night cycle in hours24
Nitrate (μmol/L)882
Ammonium (μmol/L)100
Phosphate (μmol/L).4
Silicate (μmol/L)106
Total Fe (nmol/L)4
Investigation typeEukaryotes
Other experimental metadata available12.5um EDTA