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Vaucheria litorea CCMP2940

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Principle Investigator(s) Mary Rumpho
External sample IDVlit_pooled
NCGR Sample IDMMETSP0946
Sample accession numberCAM_SMPL_002656
Assembly accession numberCAM_ASM_000474
Combined Assembly NameVaucheria-litorea-CCMP2940
GenusVaucheria
Specieslitorea
StrainCCMP2940
ClonalNo
AxenicNo
Prelim. NCBI Taxon ID109269
18S rRNA
Importance of organism and transcriptomesThe chloroplasts of Vaucheria litorea are used by certain sacoglossan molluscs in kleptoplastic symbiosis. Plastid function and regulation in the alga and the animal is poorly understood. Characterizing the transcriptome of this algal will aid in underst
Additional citations and references
Environmental Data
Primary citation for organism's characterization, if availableAgardh, C.A. (1823). Species algarum rite congitae, com synonymis, differentiis specificis et descriptionibus succinctis. Volumen primum pars posterior.pp. [vii-viii],[300]-531. Luncae [Lund]: ex officina Berlingiana.
Depth (m).1
Collection date01-JUL-07
Sample collection siteAtlantic_Ocean
Habitat descriptionsalt marsh
Habitatmarine habitat
CountryUNITED STATES
Experimental Data
Date of experiment30-JUN-11
Growth mediummodified f/2 media
Modifications to growth mediumFinal molar concentration of vitamins as follows: Thiamine - HCl =1.184E-07M; Biotin=1.60E-07M; Vitamin B12=2.95E-08M
Temperature (ºC)18
Salinty (psu)32
pH7.5
Nitrate (μmol/L).352
Phosphate (μmol/L).0144
Total Fe (nmol/L)5.54
Trace elements (total) (nmol/L).4377
Investigation typeEukaryotes
Other experimental metadata availableRNA will be pooled from algae grown under high, ambient and low light and collected from time points spanning the diurnal cycle.