Home :: List of Publicly Available Datasets :: Karlodinium micrum CCMP2283

Karlodinium micrum CCMP2283

Downloads:


Principle Investigator(s) Geoff Sinclair, Boris Wawrik
External sample IDK.micrum L1 - P
NCGR Sample IDMMETSP1017
Sample accession numberCAM_SMPL_002694
Assembly accession numberCAM_ASM_000512
Combined Assembly NameKarlodinium-micrum-CCMP2283
GenusKarlodinium
Speciesmicrum
StrainCCMP2283
ClonalUnknown
AxenicNo
Prelim. NCBI Taxon ID342587
18S rRNA
Importance of organism and transcriptomesDinoflagellates are a key component of the eukaryotic phytoplankton in all of the world?s oceans. Despite their importance, mechanistic understanding of their physiological responses to important environmental changes, such as nutrient loading remains relatively poorly understood, since very little genetic information is available due to the immense size of their genomes. Transcriptome sequencing will provide significant insight into the genomic complexity of this group and a foundation upon which to explore the linkages between genomic and phenotypic responses in response to environmental changes that threaten coastal ecosystems.
Additional citations and references
Environmental Data
Latitude32.2167
Longitude80.7355
Habitat descriptioncoastal
Other environmental metadata availableIsolate from tidally influenced retention pond, Marshide Properties, Hilton Head, South Carolina USA
Other environmental metadata availableIsolate from tidally influenced retention pond, Marshide Properties, Hilton Head, South Carolina USA
Habitatmarine habitat
Experimental Data
Date of experiment01-JUL-07
Growth mediumL1
Modifications to growth mediumnone
Temperature (ºC)22
Salinty (psu)20
pH8.2
Light (µmol photons / m2 / sec)60
Day portion of day:night cycle in hours12
Night portion of day:night cycle in hours12
Nitrate (μmol/L)60
Trace elements (total) (nmol/L)1170
Prey organism, if applicable (genus and species)none