Marine Microbial Eukaryote Transcriptome Sequencing Project
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Pseudo-nitzschia pungens cf. cingulata
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| Principle Investigator(s) | E. Virginia Armbrust |
|---|---|
| External sample ID | Pseudo-nitzschia pungens cf. cingulata |
| NCGR Sample ID | MMETSP1060 |
| Sample accession number | CAM_SMPL_002609 |
| Assembly accession number | CAM_ASM_000427 |
| Combined Assembly Name | N/A |
| Genus | Pseudo-nitzschia |
| Species | pungens |
| Strain | cf. cingulata |
| Clonal | Yes |
| Axenic | No |
| Prelim. NCBI Taxon ID | 37318 |
| 18S rRNA | |
| Importance of organism and transcriptomes | |
| Additional citations and references | |
| Environmental Data | |
| Latitude | 47.6901 |
| Longitude | -122.40041 |
| Collection date | 01-JUL-10 |
| Sample collection site | Pacific_Ocean |
| Other collection site info | Golden Gardens, Puget Sound, WA |
| Sample material (e.g. "seawater," "sediment," etc.) | Seawater |
| Filter fraction minimum (μm) | .4 |
| Filter fraction maximum (μm) | .4 |
| Volume filtered (L) | 4 |
| ENVO term for habitat - primary term | Acquatic: marine |
| ENVO term for habitat - secondary term | Not Applicable |
| Other environmental metadata available | no other types of environmental metadata available |
| Other environmental metadata available | no other types of environmental metadata available |
| Habitat | marine habitat |
| Country | UNITED STATES |
| Experimental Data | |
| Date of experiment | 07-DEC-11 |
| Growth medium | f/2 |
| Temperature (ºC) | 13 |
| Salinty (psu) | 21 |
| pH | 8 |
| Light (µmol photons / m2 / sec) | 166 |
| Day portion of day:night cycle in hours | 16 |
| Night portion of day:night cycle in hours | 8 |
| Nitrate (μmol/L) | 882 |
| Phosphate (μmol/L) | 36.2 |
| Silicate (μmol/L) | 106 |
| List of amino acids and concentrations, with units | thiamine, 200 mg; biotin, 10 mL; cyanocobalamin, 1 mL |
| Trace elements (total) (nmol/L) | 24.6634 |
| Investigation type | Eukaryotes |