Marine Microbial Eukaryote Transcriptome Sequencing Project
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Pavlova sp. CCMP459
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| Principle Investigator(s) | Sheri Floge |
|---|---|
| External sample ID | CCMP 459 +Uv 12h |
| NCGR Sample ID | MMETSP1140 |
| Sample accession number | CAM_SMPL_002895 |
| Assembly accession number | CAM_ASM_000713 |
| Combined Assembly Name | Pavlova-sp-CCMP459 |
| Genus | Pavlova |
| Species | sp. |
| Strain | CCMP459 |
| Clonal | Yes |
| Axenic | Yes |
| Prelim. NCBI Taxon ID | 298111 |
| 18S rRNA | |
| Importance of organism and transcriptomes | Pavlova is an oil-rich algae of interest to biofuels research and the aquaculture industry; this strain harbors a putative persistent virus. |
| Additional citations and references | |
| Environmental Data | |
| Experimental Data | |
| Date of experiment | 01-DEC-11 |
| Growth medium | f/2 amended seawater |
| Modifications to growth medium | f/2 nutrients, no silica |
| Temperature (ºC) | 16 |
| Salinty (psu) | 34 |
| pH | 8.1 |
| Light (µmol photons / m2 / sec) | 200 |
| Day portion of day:night cycle in hours | 16 |
| Night portion of day:night cycle in hours | 8 |
| Nitrate (μmol/L) | 882 |
| Phosphate (μmol/L) | 36.2 |
| Trace elements (total) (nmol/L) | 12794 |
| Investigation type | Eukaryotes |
| Other experimental metadata available | Sample following 2min of UV-C (254nm) irradiation preceding cell population decline at approximately 12hours post-irradiation. |