Marine Microbial Eukaryote Transcriptome Sequencing Project
Home :: List of Publicly Available Datasets :: Micromonas sp. CCMP2099
Micromonas sp. CCMP2099
Downloads:
| Principle Investigator(s) | Alexandra Z. Worden |
|---|---|
| External sample ID | temp_d4 |
| NCGR Sample ID | MMETSP1390 |
| Sample accession number | CAM_SMPL_003148 |
| Assembly accession number | CAM_ASM_000866 |
| Combined Assembly Name | Micromonas-sp-CCMP2099 |
| Genus | Micromonas |
| Species | sp. |
| Strain | CCMP2099 |
| Clonal | Unknown |
| Axenic | No |
| Prelim. NCBI Taxon ID | 38833 |
| 18S rRNA | |
| Importance of organism and transcriptomes | Micromonas sp. CCMP2099 is an abundant, pan-arctic picoplankton endemic to the Arctic Ocean. This transcriptome is from a culture grown first grown at elevated temperature (12.5C) for three days, then moved to normal temperature (8.5C) for a day before harvest. |
| Additional citations and references | |
| Environmental Data | |
| Primary citation for organism's characterization, if available | DOI: 10.1111/j.1529-8817.2006.00310.x |
| Latitude | 76.2833 |
| Longitude | -74.75 |
| Depth (m) | 55 |
| Collection date | 07-APR-98 |
| Sample collection site | Arctic |
| Other collection site info | Baffin Bay |
| Sample material (e.g. "seawater," "sediment," etc.) | seawater |
| ENVO term for habitat - primary term | Acquatic: marine |
| Habitat | marine habitat |
| Country | CANADA |
| Experimental Data | |
| Date of experiment | 09-NOV-10 |
| Growth medium | L1-Si amended natural seawater (Eastern Pacific) |
| Modifications to growth medium | L1 for all nutrients except omitted silicate |
| Temperature (ºC) | 12.5 |
| Salinty (psu) | 35 |
| pH | 8.2 |
| Light (µmol photons / m2 / sec) | 80 |
| Day portion of day:night cycle in hours | 14 |
| Night portion of day:night cycle in hours | 10 |
| Nitrate (μmol/L) | 882 |
| Phosphate (μmol/L) | 36 |
| Trace elements (total) (nmol/L) | 12780 |
| Investigation type | Eukaryotes |