Oxyrrhis marina LB1974

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Environmental Data
Principle Investigator(s)	Matthew Johnson
External sample ID	Oxy-PtWT_20min
NCGR Sample ID	MMETSP1424
Sample accession number	CAM_SMPL_003183
Assembly accession number	CAM_ASM_000901
Combined Assembly Name	Oxyrrhis-marina-LB1974
Genus	Oxyrrhis
Species	marina
Strain	LB1974
Clonal	No
Axenic	No
Prelim. NCBI Taxon ID	2969
18S rRNA	TACCTTCTGTATTCTGAGGCTAATGCGTGCAGGCAACAAGACAGTCCAAA ACATGCACATATAAGTCGAAATATCACCAATTTATTGGGTTGATGTGCAA CACAATTATATAAGCTGTTGCTTGTCACAAAAGCGATTATATTCTTACCT ATCAGCTTGCGATGATACGCTAGTGACGTATTATGGCTGTTACGGGTGGC GAAGAATTAGGGTTTGATCTCGGAGAGGACGCTTGAGAAATAGCGGCTAC ATCTAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCTTGACACAAGGAG GTAGTGACAAGAAATAACTGTGTGTGGCTCAATGCTGCACATCCGGAATG TGTGACAGGTTAAGCGTGTTGCGAGTAGCTATTGGAGGGCAAGTCTGGTG CCAGCCGCCGCGGTAATTCCAGCTCCAAGAGTGTATATTAAAGTTGTTGC GGTTGAAAAGCTCGTAGTTGGATTTATGCTATGCTGGTACAGTCGACCCC CTGGGTAGGACTTGTATTGTTGCATTGCACATTGTAGAATTTTTGTACGT TTTTCAGTAAATGTGCAGAATGCTGCTTAGTTACTTTGAGGAAAGTGGAG TGTCACACGCAGGTTGCGCCGTGAACATGCTAGCATGGCATGACGCTGTA TGACTACGAGTCTTTTTGAATGGTTTCGGGACACGTGGTAATGATTGATA TGAGGTGTTGGGGATACTCATATTTGACAGTTAGAGGTGAAATTCTTGGA TTTGTCAAAGATGAACAAATGCAATAGCATTTATCATGGATGTTTCATTT GATCAAGAACGAAAGTTAGGGGATCGAAGACGATCAGATACCGTCCTAGT CTTAACCATAAACTATGCCAACTGGAAATTGGAATATATGGAGAGAAAAT ACATTCAGTATTGTGCCTGAAAAGAGTAAGTGTGTGGGCTCCGGGGGGAG TATAGTTGCAAGACTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAG GAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAATCTCACCAAGT CCAGACATACGAAGGATTGACAGATTAATTGCTCTTTCTCGATTGTATGG GTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAAT TCCGTTAACGAACGAGATCCTATTCTGCTAACTGTTGCAACAGTCTTTGG AATGTTGGTACACTTAGAGGGACATTGCGTGAGTAATGCACGGAAGAGTC GGGCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCG CTACAATGGCACACGCCCCAATGTATCTATGTCTGACAAGAATATAGGAT CAAGCAACGATGCCGTGCCGGGAATAGATGATTGTAATTTTTTATCTTGA ACGAGGAATTCCTAGTAAGGACAGATCAACAATCTGTGCTGATTACGTCC CTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAGTAATCCGGT GAATGGTGACGATTGTCCGAACGCTCCTGAGCCTCGTGCAACAAGCATCG TTAACCTCACTACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGG TGAACCTGCAGAAGGATC
Importance of organism and transcriptomes	Oxyrrhis marina is a model estuarine and coastal marine heterotrophic dinoflagellate that is easy to culture and used in many labs. This transcriptome will allow us to identify O. marina genes that are involved in predator prey interactions and heterotrophic metabolism.
Additional citations and references
Primary citation for organism's characterization, if available	Dujardin, F. (1841). Histoire naturelle des Zoophytes, Infusoires, comprenant la physiologie et la clasification de ces animaux et la maniere de les etudier a l'aide du microscope. pp. i-xii, 1-684. Paris: Librarie Encyclopedique de Roret.
Collection date	01-MAY-66
Sample collection site	Pacific_Ocean
Other collection site info	La Jolla, CA, net tow from SOI pier, by R.A. Lewin
Sample material (e.g. "seawater," "sediment," etc.)	seawater
ENVO term for habitat - primary term	Acquatic: marine
Habitat	marine habitat
Country	UNITED STATES
Experimental Data
Date of experiment	24-OCT-11
Growth medium	Sterile coastal sea-water
Temperature (ºC)	18
Salinty (psu)	34
pH	8.3
Light (µmol photons / m2 / sec)	20
Day portion of day:night cycle in hours	14
Night portion of day:night cycle in hours	10
Prey organism, if applicable (genus and species)	Phaeodactylum tricornutum
Investigation type	Eukaryotes