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Undescribed Undescribed NY07348D

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Principle Investigator(s) Bassem Allam
External sample IDQPX-NY-PB
NCGR Sample IDMMETSP1433
Sample accession numberCAM_SMPL_003281
Assembly accession numberCAM_ASM_001092
Combined Assembly NameN/A
GenusUndescribed
SpeciesUndescribed
StrainNY07348D
ClonalYes
AxenicYes
Prelim. NCBI Taxon ID96639
18S rRNA
Importance of organism and transcriptomesThe thraustochytrid known as QPX (Quahog Parasite Unknown) has caused significant disease and mortality in aquacultured and wild populations of the hard clam Mercenaria mercenaria along the east coast of North America since the 1950?s. Available knowledge on QPX is extremely limited. Generated new sequence data will allow the identification of factors involved in QPX virulence and pathogenicity offering a better understanding of conditions affecting the occurrence of disease outbreaks.
Additional citations and referencesPerrigault M, Allam B. (2009). Cytotoxicity of Quahog Parasite Unknown (QPX) toward hard clam (Mercenaria mercenaria) haemocytes and interactions between different pathogen isolates and host strains. Parasitology 136: 1281-1289. Perrigault M, BuggZ DM., Allam B. (2010). Effect of environmental factors on survival and growth of quahog parasite unknown (QPX) in vitro. Journal of Invertebrate Pathology 104: 83-89.
Environmental Data
Primary citation for organism's characterization, if availableQian H., Liu Q., Allam B., Collier J.L. (2007). Molecular genetic variation within and among isolates of QPX (Thraustochytridae), a parasite of the hard clam (Mercenaria mercenaria). Diseases of Aquatic Organisms 77: 159-168.
Latitude40.49657
Longitude-74.17591
Depth (m)10
Collection date01-NOV-03
Collection time09:00 AM
Sample collection siteAtlantic_Ocean
Other collection site infoRaritan Bay, New York
Sample material (e.g. "seawater," "sediment," etc.)Clam tissue
ENVO term for habitat - primary termAcquatic: marine
Habitatmarine habitat
CountryUNITED STATES
Experimental Data
Date of experiment01-JUL-13
Growth mediumMinimal Essential Medium with 10% fetal bovine serum
Temperature (ÂșC)23
Salinty (psu)35
pH7.2
Investigation typeEukaryotes
Other experimental metadata availableIsolate grown in 25 cm2 culture flasks in ambient air