Marine Microbial Eukaryote Transcriptome Sequencing Project
Home :: List of Publicly Available Datasets :: Vitrella brassicaformis CCMP3346
Vitrella brassicaformis CCMP3346
Downloads:
| Principle Investigator(s) | Mike Preston |
|---|---|
| External sample ID | |
| NCGR Sample ID | MMETSP1451 |
| Sample accession number | CAM_SMPL_003305 |
| Assembly accession number | CAM_ASM_001116 |
| Combined Assembly Name | N/A |
| Genus | Vitrella |
| Species | brassicaformis |
| Strain | CCMP3346 |
| Clonal | Yes |
| Axenic | No |
| Prelim. NCBI Taxon ID | 1169540 |
| 18S rRNA | N/A |
| Importance of organism and transcriptomes | A common red algal origin of the apicomplexan, dinoflagellate and heterokont plastids. |
| Additional citations and references | |
| Environmental Data | |
| Primary citation for organism's characterization, if available | Obornik, M., Modry, D., Lukes, M., Cernotikova-Stribrna, E., Cihlar, J., Tesarova, M., Kotabova, E., Vancova, M., Prasil, O. & Lukes, J. (2012). Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef. Protist 163(2): 306-323. |
| Latitude | -23.5 |
| Longitude | 152 |
| Depth (m) | 10 |
| Salinity (psu) | 30 |
| Temperature (ºC) | 22 |
| pH | 7.9 |
| Collection date | 01-DEC-01 |
| Sample collection site | Pacific_Ocean |
| Other collection site info | Great Barrier reef |
| Sample material (e.g. "seawater," "sediment," etc.) | Seawater |
| ENVO term for habitat - primary term | Acquatic: marine |
| Habitat | marine habitat |
| Country | AUSTRALIA |
| Experimental Data | |
| Date of experiment | 25-AUG-13 |
| Growth medium | L1 amended seawater |
| Temperature (ºC) | 24 |
| Salinty (psu) | 33 |
| pH | 8.2 |
| Light (µmol photons / m2 / sec) | 100 |
| Day portion of day:night cycle in hours | 13 |
| Night portion of day:night cycle in hours | 11 |
| Nitrate (μmol/L) | 882 |
| Phosphate (μmol/L) | 36.2 |
| Silicate (μmol/L) | 106 |
| Total Fe (nmol/L) | 11.7 |
| Trace elements (total) (nmol/L) | 12871.2 |
| CO2 (ppm) | 390 |
| Pressure (atm) | 1 |
| Investigation type | Eukaryotes |