Marine Microbial Eukaryote Transcriptome Sequencing Project
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Synchroma pusillum CCMP3072
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| Principle Investigator(s) | Mike Preston |
|---|---|
| External sample ID | |
| NCGR Sample ID | MMETSP1452 |
| Sample accession number | CAM_SMPL_003306 |
| Assembly accession number | CAM_ASM_001117 |
| Combined Assembly Name | N/A |
| Genus | Synchroma |
| Species | pusillum |
| Strain | CCMP3072 |
| Clonal | Yes |
| Axenic | No |
| Prelim. NCBI Taxon ID | 1181717 |
| 18S rRNA | |
| Importance of organism and transcriptomes | Interesting representative of amoeboid algae |
| Additional citations and references | |
| Environmental Data | |
| Primary citation for organism's characterization, if available | Schmidt, M., Horn, Flieger, K., Wilhelm, C. & Schnetter, R. (2012). Synchroma pusillum sp. nov. and other new algal isolates with chloroplast complexes confirm the Synchromophyceae (Ochrophyta) as a widely distributed group of amoeboid algae. Protist 163: 554-559. |
| Latitude | 11.335 |
| Longitude | -74.0521 |
| Depth (m) | .5 |
| Salinity (psu) | 30 |
| Temperature (ºC) | 22 |
| pH | 7.9 |
| Collection date | 01-FEB-90 |
| Sample collection site | Caribbean Sea |
| Sample material (e.g. "seawater," "sediment," etc.) | Seawater |
| ENVO term for habitat - primary term | Acquatic: marine |
| Habitat | marine habitat |
| Country | COLOMBIA |
| Experimental Data | |
| Date of experiment | 25-AUG-13 |
| Growth medium | L1 amended seawater |
| Temperature (ºC) | 24 |
| Salinty (psu) | 33 |
| pH | 8.2 |
| Light (µmol photons / m2 / sec) | 100 |
| Day portion of day:night cycle in hours | 13 |
| Night portion of day:night cycle in hours | 11 |
| Nitrate (μmol/L) | 882 |
| Phosphate (μmol/L) | 36.2 |
| Silicate (μmol/L) | 106 |
| Total Fe (nmol/L) | 11.7 |
| Trace elements (total) (nmol/L) | 12871.2 |
| CO2 (ppm) | 390 |
| Pressure (atm) | 1 |
| Investigation type | Eukaryotes |